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Mutant Information

Mutant Name	FN2190-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2190-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9308570 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g119400
SBS Chr1 17335095 G-A Hetero INTERGENIC
SBS Chr1 26802633 C-T Homo UTR_5_PRIME
SBS Chr1 43370532 C-T Hetero INTERGENIC
SBS Chr2 8004986 A-G Hetero INTERGENIC
SBS Chr2 19237105 G-C Hetero INTERGENIC
SBS Chr3 2622616 A-T Hetero UTR_3_PRIME
SBS Chr3 13437379 G-A Homo INTERGENIC
SBS Chr3 27457321 C-T Hetero INTERGENIC
SBS Chr3 34451754 T-A Hetero INTERGENIC
SBS Chr4 104292 A-G Homo INTRON
SBS Chr4 16485764 G-A Hetero INTRON
SBS Chr4 29123546 C-T Hetero UTR_5_PRIME
SBS Chr4 34415650 C-T Hetero INTERGENIC
SBS Chr5 9034735 C-T Hetero INTERGENIC
SBS Chr5 28667361 T-A Hetero INTERGENIC
SBS Chr6 1142516 G-A Homo INTERGENIC
SBS Chr6 9993851 T-A Hetero INTERGENIC
SBS Chr6 17959131 A-T Hetero INTERGENIC
SBS Chr6 18406181 C-A Hetero INTERGENIC
SBS Chr6 21476870 T-A Hetero INTERGENIC
SBS Chr7 5067188 G-T Hetero INTRON
SBS Chr7 10690574 T-A Hetero INTERGENIC
SBS Chr8 6776100 T-C Homo INTERGENIC
SBS Chr9 5661201 T-C Hetero INTERGENIC
SBS Chr9 16267688 G-C Hetero SYNONYMOUS_CODING
SBS Chr9 19636767 T-G Hetero INTERGENIC
SBS Chr10 1571753 G-A Hetero INTERGENIC
SBS Chr10 3323445 T-G Hetero INTERGENIC
SBS Chr10 17116912 G-A Hetero INTERGENIC
SBS Chr10 19421745 T-G Hetero INTERGENIC
SBS Chr11 24320753 C-A Hetero INTERGENIC
SBS Chr12 4087971 A-G Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4344295 4344321 26
Deletion Chr1 4939105 4939107 2
Deletion Chr10 9662206 9662208 2
Deletion Chr7 11422991 11422992 1
Deletion Chr9 12858652 12858684 32
Deletion Chr6 16138171 16138179 8
Deletion Chr7 17998178 17998186 8
Deletion Chr9 18719763 18719768 5 OsKitaake09g148500
Deletion Chr9 18954779 18954789 10
Deletion Chr10 21734147 21734152 5
Deletion Chr3 22788508 22788527 19
Deletion Chr2 25461023 25461026 3
Deletion Chr4 27773709 27773711 2
Deletion Chr2 28130945 28130946 1
Deletion Chr7 28704302 28704307 5
Deletion Chr7 29081946 29081949 3 OsKitaake07g277600
Deletion Chr2 32025056 32025057 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36424500 36424503 2
Insertion Chr2 4019689 4019692 2
Insertion Chr5 364836 364839 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 15919008 16405742

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5337667 Chr11 27337998
Translocation Chr9 19567007 Chr3 15919009

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9308570	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g119400
SBS	Chr1	17335095	G-A	Hetero	INTERGENIC
SBS	Chr1	26802633	C-T	Homo	UTR_5_PRIME
SBS	Chr1	43370532	C-T	Hetero	INTERGENIC
SBS	Chr2	8004986	A-G	Hetero	INTERGENIC
SBS	Chr2	19237105	G-C	Hetero	INTERGENIC
SBS	Chr3	2622616	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	13437379	G-A	Homo	INTERGENIC
SBS	Chr3	27457321	C-T	Hetero	INTERGENIC
SBS	Chr3	34451754	T-A	Hetero	INTERGENIC
SBS	Chr4	104292	A-G	Homo	INTRON
SBS	Chr4	16485764	G-A	Hetero	INTRON
SBS	Chr4	29123546	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	34415650	C-T	Hetero	INTERGENIC
SBS	Chr5	9034735	C-T	Hetero	INTERGENIC
SBS	Chr5	28667361	T-A	Hetero	INTERGENIC
SBS	Chr6	1142516	G-A	Homo	INTERGENIC
SBS	Chr6	9993851	T-A	Hetero	INTERGENIC
SBS	Chr6	17959131	A-T	Hetero	INTERGENIC
SBS	Chr6	18406181	C-A	Hetero	INTERGENIC
SBS	Chr6	21476870	T-A	Hetero	INTERGENIC
SBS	Chr7	5067188	G-T	Hetero	INTRON
SBS	Chr7	10690574	T-A	Hetero	INTERGENIC
SBS	Chr8	6776100	T-C	Homo	INTERGENIC
SBS	Chr9	5661201	T-C	Hetero	INTERGENIC
SBS	Chr9	16267688	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	19636767	T-G	Hetero	INTERGENIC
SBS	Chr10	1571753	G-A	Hetero	INTERGENIC
SBS	Chr10	3323445	T-G	Hetero	INTERGENIC
SBS	Chr10	17116912	G-A	Hetero	INTERGENIC
SBS	Chr10	19421745	T-G	Hetero	INTERGENIC
SBS	Chr11	24320753	C-A	Hetero	INTERGENIC
SBS	Chr12	4087971	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4344295	4344321	26
Deletion	Chr1	4939105	4939107	2
Deletion	Chr10	9662206	9662208	2
Deletion	Chr7	11422991	11422992	1
Deletion	Chr9	12858652	12858684	32
Deletion	Chr6	16138171	16138179	8
Deletion	Chr7	17998178	17998186	8
Deletion	Chr9	18719763	18719768	5	OsKitaake09g148500
Deletion	Chr9	18954779	18954789	10
Deletion	Chr10	21734147	21734152	5
Deletion	Chr3	22788508	22788527	19
Deletion	Chr2	25461023	25461026	3
Deletion	Chr4	27773709	27773711	2
Deletion	Chr2	28130945	28130946	1
Deletion	Chr7	28704302	28704307	5
Deletion	Chr7	29081946	29081949	3	OsKitaake07g277600
Deletion	Chr2	32025056	32025057	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	15919008	16405742

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes