Search Kitaake

Mutant Information

Mutant Name	FN2191-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2191-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6745355 A-G Hetero INTRON
SBS Chr1 8873418 A-T Hetero INTERGENIC
SBS Chr1 23318627 T-C Homo INTRON
SBS Chr1 29112730 G-T Hetero INTERGENIC
SBS Chr1 39137083 T-C Hetero INTERGENIC
SBS Chr1 39766570 T-C Hetero INTERGENIC
SBS Chr1 40419003 C-T Hetero INTERGENIC
SBS Chr2 3896080 G-A Hetero INTERGENIC
SBS Chr2 11929078 C-A Hetero INTERGENIC
SBS Chr2 17484934 A-G Hetero INTERGENIC
SBS Chr3 5475233 A-T Homo NON_SYNONYMOUS_CODING OsKitaake03g077700
SBS Chr3 11883151 G-A Homo INTERGENIC
SBS Chr3 26423181 A-G Hetero INTRON
SBS Chr3 36484215 T-C Hetero INTERGENIC
SBS Chr4 13537513 C-T Hetero INTERGENIC
SBS Chr4 17536838 C-T Hetero INTERGENIC
SBS Chr4 18518470 G-T Hetero INTERGENIC
SBS Chr4 19498718 C-T Hetero INTERGENIC
SBS Chr4 19789052 A-G Hetero INTERGENIC
SBS Chr5 22440792 C-T Homo INTERGENIC
SBS Chr5 30066452 G-A Hetero INTERGENIC
SBS Chr6 12587669 T-C Hetero INTRON
SBS Chr6 15258472 C-T Hetero INTERGENIC
SBS Chr6 21903098 A-G Hetero INTERGENIC
SBS Chr6 25173016 C-T Hetero INTERGENIC
SBS Chr6 25343774 A-T Hetero INTERGENIC
SBS Chr7 17807483 C-T Homo INTERGENIC
SBS Chr7 22586524 G-A Homo INTRON
SBS Chr7 24249222 A-C Hetero STOP_GAINED OsKitaake07g215900
SBS Chr7 24383412 A-C Hetero INTRON
SBS Chr7 28353963 C-A Hetero INTRON
SBS Chr8 11311497 C-T Hetero INTERGENIC
SBS Chr8 15119902 G-T Homo INTRON
SBS Chr8 15485107 C-T Homo INTERGENIC
SBS Chr8 22229437 T-A Hetero INTERGENIC
SBS Chr8 22229438 G-A Hetero INTERGENIC
SBS Chr9 3268822 G-A Hetero INTERGENIC
SBS Chr9 9761995 G-C Hetero INTRON
SBS Chr9 14815189 T-C Hetero INTERGENIC
SBS Chr10 6762572 C-T Hetero INTERGENIC
SBS Chr10 9405033 C-T Hetero INTERGENIC
SBS Chr10 12010588 G-C Hetero INTERGENIC
SBS Chr10 14208478 C-T Hetero INTERGENIC
SBS Chr11 9836719 G-C Homo INTERGENIC
SBS Chr11 22187095 A-T Homo INTERGENIC
SBS Chr11 22187096 A-T Homo INTERGENIC
SBS Chr11 22187097 A-T Homo INTERGENIC
SBS Chr11 24121204 C-G Hetero INTERGENIC
SBS Chr12 6191211 G-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 7082001 7433000 350999 10
Deletion Chr9 7437001 7682000 244999 9
Deletion Chr9 7693001 8003000 309999 16
Deletion Chr11 11991757 11991775 18
Deletion Chr8 16195761 16195762 1
Deletion Chr8 16552331 16552344 13
Deletion Chr2 19608612 19608623 11
Deletion Chr2 20778461 20778467 6
Deletion Chr8 21599953 21599959 6
Deletion Chr9 21622219 21622540 321
Deletion Chr3 26269001 26326000 56999
Deletion Chr5 27306820 27306823 3 OsKitaake05g247200
Deletion Chr11 28656732 28656733 1
Deletion Chr1 40573001 40591000 17999 3
Deletion Chr1 42221179 42221180 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 33229926 33229931 4
Insertion Chr5 29918464 29918467 2
Insertion Chr10 12963770 12963772 1
Insertion Chr7 11992111 11992113 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 22744186 Chr7 5731560
Translocation Chr7 22937440 Chr3 26268138 OsKitaake07g197400
Translocation Chr11 25352289 Chr8 8878961 OsKitaake11g203800
Translocation Chr11 26046292 Chr7 5731632 OsKitaake11g210300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6745355	A-G	Hetero	INTRON
SBS	Chr1	8873418	A-T	Hetero	INTERGENIC
SBS	Chr1	23318627	T-C	Homo	INTRON
SBS	Chr1	29112730	G-T	Hetero	INTERGENIC
SBS	Chr1	39137083	T-C	Hetero	INTERGENIC
SBS	Chr1	39766570	T-C	Hetero	INTERGENIC
SBS	Chr1	40419003	C-T	Hetero	INTERGENIC
SBS	Chr2	3896080	G-A	Hetero	INTERGENIC
SBS	Chr2	11929078	C-A	Hetero	INTERGENIC
SBS	Chr2	17484934	A-G	Hetero	INTERGENIC
SBS	Chr3	5475233	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g077700
SBS	Chr3	11883151	G-A	Homo	INTERGENIC
SBS	Chr3	26423181	A-G	Hetero	INTRON
SBS	Chr3	36484215	T-C	Hetero	INTERGENIC
SBS	Chr4	13537513	C-T	Hetero	INTERGENIC
SBS	Chr4	17536838	C-T	Hetero	INTERGENIC
SBS	Chr4	18518470	G-T	Hetero	INTERGENIC
SBS	Chr4	19498718	C-T	Hetero	INTERGENIC
SBS	Chr4	19789052	A-G	Hetero	INTERGENIC
SBS	Chr5	22440792	C-T	Homo	INTERGENIC
SBS	Chr5	30066452	G-A	Hetero	INTERGENIC
SBS	Chr6	12587669	T-C	Hetero	INTRON
SBS	Chr6	15258472	C-T	Hetero	INTERGENIC
SBS	Chr6	21903098	A-G	Hetero	INTERGENIC
SBS	Chr6	25173016	C-T	Hetero	INTERGENIC
SBS	Chr6	25343774	A-T	Hetero	INTERGENIC
SBS	Chr7	17807483	C-T	Homo	INTERGENIC
SBS	Chr7	22586524	G-A	Homo	INTRON
SBS	Chr7	24249222	A-C	Hetero	STOP_GAINED	OsKitaake07g215900
SBS	Chr7	24383412	A-C	Hetero	INTRON
SBS	Chr7	28353963	C-A	Hetero	INTRON
SBS	Chr8	11311497	C-T	Hetero	INTERGENIC
SBS	Chr8	15119902	G-T	Homo	INTRON
SBS	Chr8	15485107	C-T	Homo	INTERGENIC
SBS	Chr8	22229437	T-A	Hetero	INTERGENIC
SBS	Chr8	22229438	G-A	Hetero	INTERGENIC
SBS	Chr9	3268822	G-A	Hetero	INTERGENIC
SBS	Chr9	9761995	G-C	Hetero	INTRON
SBS	Chr9	14815189	T-C	Hetero	INTERGENIC
SBS	Chr10	6762572	C-T	Hetero	INTERGENIC
SBS	Chr10	9405033	C-T	Hetero	INTERGENIC
SBS	Chr10	12010588	G-C	Hetero	INTERGENIC
SBS	Chr10	14208478	C-T	Hetero	INTERGENIC
SBS	Chr11	9836719	G-C	Homo	INTERGENIC
SBS	Chr11	22187095	A-T	Homo	INTERGENIC
SBS	Chr11	22187096	A-T	Homo	INTERGENIC
SBS	Chr11	22187097	A-T	Homo	INTERGENIC
SBS	Chr11	24121204	C-G	Hetero	INTERGENIC
SBS	Chr12	6191211	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	7082001	7433000	350999	10
Deletion	Chr9	7437001	7682000	244999	9
Deletion	Chr9	7693001	8003000	309999	16
Deletion	Chr11	11991757	11991775	18
Deletion	Chr8	16195761	16195762	1
Deletion	Chr8	16552331	16552344	13
Deletion	Chr2	19608612	19608623	11
Deletion	Chr2	20778461	20778467	6
Deletion	Chr8	21599953	21599959	6
Deletion	Chr9	21622219	21622540	321
Deletion	Chr3	26269001	26326000	56999
Deletion	Chr5	27306820	27306823	3	OsKitaake05g247200
Deletion	Chr11	28656732	28656733	1
Deletion	Chr1	40573001	40591000	17999	3
Deletion	Chr1	42221179	42221180	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	22744186	Chr7	5731560
Translocation	Chr7	22937440	Chr3	26268138	OsKitaake07g197400
Translocation	Chr11	25352289	Chr8	8878961	OsKitaake11g203800
Translocation	Chr11	26046292	Chr7	5731632	OsKitaake11g210300

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes