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Mutant Information

Mutant Name	FN2192-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2192-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6788016 C-G Hetero INTERGENIC
SBS Chr1 12612896 C-T Hetero INTERGENIC
SBS Chr1 13330375 T-A Hetero INTERGENIC
SBS Chr1 13449651 A-T Hetero INTRON
SBS Chr1 15308003 C-A Homo INTERGENIC
SBS Chr1 31413198 A-T Homo INTRON
SBS Chr1 32855825 T-C Hetero INTRON
SBS Chr1 33115889 C-T Hetero INTERGENIC
SBS Chr1 33174726 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g338700
SBS Chr1 35060640 A-T Hetero INTERGENIC
SBS Chr2 869006 T-A Hetero INTERGENIC
SBS Chr2 3308824 A-T Hetero INTERGENIC
SBS Chr2 9712294 A-T Hetero INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr2 32738245 G-A Homo INTERGENIC
SBS Chr3 4093109 C-A Hetero INTERGENIC
SBS Chr3 14231929 G-A Hetero INTERGENIC
SBS Chr3 14231930 G-A Hetero INTERGENIC
SBS Chr3 16896771 C-T Hetero INTERGENIC
SBS Chr3 17725803 C-A Hetero INTERGENIC
SBS Chr3 20979952 T-A Hetero INTERGENIC
SBS Chr3 24475030 T-A Homo INTERGENIC
SBS Chr3 28231856 C-T Hetero INTRON
SBS Chr3 31256073 C-T Hetero INTERGENIC
SBS Chr3 33740902 C-T Homo INTERGENIC
SBS Chr3 33762220 T-A Homo INTERGENIC
SBS Chr4 8447091 G-C Hetero INTERGENIC
SBS Chr4 11228246 T-C Hetero INTERGENIC
SBS Chr4 11534600 T-A Hetero INTERGENIC
SBS Chr4 17312190 T-A Hetero INTRON
SBS Chr4 17840633 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g089400
SBS Chr4 23366383 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 28454364 G-T Hetero SYNONYMOUS_CODING
SBS Chr4 31473357 T-C Homo INTERGENIC
SBS Chr4 31620825 T-C Hetero INTERGENIC
SBS Chr5 258568 A-G Hetero INTRON
SBS Chr5 18526106 G-T Hetero INTRON
SBS Chr5 24776630 G-T Hetero INTERGENIC
SBS Chr5 28390599 T-C Hetero INTRON
SBS Chr5 29928117 A-T Homo INTERGENIC
SBS Chr6 345393 G-A Homo INTERGENIC
SBS Chr6 1667280 T-C Hetero INTRON
SBS Chr6 2562993 C-A Homo UTR_3_PRIME
SBS Chr6 10831672 A-T Hetero INTERGENIC
SBS Chr6 10843239 G-A Homo INTERGENIC
SBS Chr6 14662324 A-G Hetero INTERGENIC
SBS Chr7 13664165 G-A Hetero INTERGENIC
SBS Chr7 29345891 G-A Hetero INTERGENIC
SBS Chr8 8007831 G-T Hetero INTERGENIC
SBS Chr8 19453375 G-T Hetero INTERGENIC
SBS Chr9 1483986 A-T Hetero INTERGENIC
SBS Chr9 6454781 A-G Hetero INTERGENIC
SBS Chr9 10565255 C-A Hetero INTERGENIC
SBS Chr9 12129839 A-T Hetero INTERGENIC
SBS Chr9 16783666 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g124600
SBS Chr10 1524728 G-C Homo INTERGENIC
SBS Chr10 16069252 C-A Hetero INTERGENIC
SBS Chr10 19429789 C-T Hetero INTERGENIC
SBS Chr12 2009707 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g031500
SBS Chr12 2934415 C-T Hetero INTRON
SBS Chr12 15469480 T-C Homo INTERGENIC
SBS Chr12 20442184 T-C Hetero INTERGENIC
SBS Chr12 23449040 G-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2534779 2534781 2
Deletion Chr6 2867920 2867933 13
Deletion Chr5 3153937 3153938 1 OsKitaake05g037700
Deletion Chr12 3526001 3555000 28999 4
Deletion Chr11 4491912 4491913 1
Deletion Chr11 6012502 6012504 2
Deletion Chr11 6637364 6637365 1 OsKitaake11g078800
Deletion Chr11 7282630 7282636 6
Deletion Chr9 14853312 14853342 30
Deletion Chr2 15110098 15110109 11
Deletion Chr1 16209149 16209151 2
Deletion Chr10 19277237 19277239 2
Deletion Chr2 20531340 20531344 4
Deletion Chr1 21702254 21702255 1
Deletion Chr2 22616818 22616825 7 OsKitaake02g219600
Deletion Chr5 23302185 23302189 4
Deletion Chr8 23568844 23568851 7 OsKitaake08g181200
Deletion Chr7 24537351 24537352 1
Deletion Chr5 27875036 27875037 1 OsKitaake05g255900
Deletion Chr11 29598358 29598360 2
Deletion Chr3 32152373 32152378 5
Deletion Chr3 33740866 33740872 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 17438142 17438145 2
Insertion Chr10 4237424 4237427 2
Insertion Chr11 19729520 19729525 4
Insertion Chr12 25770015 25770018 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3116358 3528717 OsKitaake12g045300
Inversion Chr12 3116889 3553203 2
Inversion Chr10 9252268 9264970
Inversion Chr1 33054606 33129188 2
Inversion Chr1 33054608 33129192 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 28483241 Chr1 33130932 OsKitaake01g338200
Translocation Chr3 28483770 Chr1 33130938 OsKitaake01g338200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6788016	C-G	Hetero	INTERGENIC
SBS	Chr1	12612896	C-T	Hetero	INTERGENIC
SBS	Chr1	13330375	T-A	Hetero	INTERGENIC
SBS	Chr1	13449651	A-T	Hetero	INTRON
SBS	Chr1	15308003	C-A	Homo	INTERGENIC
SBS	Chr1	31413198	A-T	Homo	INTRON
SBS	Chr1	32855825	T-C	Hetero	INTRON
SBS	Chr1	33115889	C-T	Hetero	INTERGENIC
SBS	Chr1	33174726	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g338700
SBS	Chr1	35060640	A-T	Hetero	INTERGENIC
SBS	Chr2	869006	T-A	Hetero	INTERGENIC
SBS	Chr2	3308824	A-T	Hetero	INTERGENIC
SBS	Chr2	9712294	A-T	Hetero	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr2	32738245	G-A	Homo	INTERGENIC
SBS	Chr3	4093109	C-A	Hetero	INTERGENIC
SBS	Chr3	14231929	G-A	Hetero	INTERGENIC
SBS	Chr3	14231930	G-A	Hetero	INTERGENIC
SBS	Chr3	16896771	C-T	Hetero	INTERGENIC
SBS	Chr3	17725803	C-A	Hetero	INTERGENIC
SBS	Chr3	20979952	T-A	Hetero	INTERGENIC
SBS	Chr3	24475030	T-A	Homo	INTERGENIC
SBS	Chr3	28231856	C-T	Hetero	INTRON
SBS	Chr3	31256073	C-T	Hetero	INTERGENIC
SBS	Chr3	33740902	C-T	Homo	INTERGENIC
SBS	Chr3	33762220	T-A	Homo	INTERGENIC
SBS	Chr4	8447091	G-C	Hetero	INTERGENIC
SBS	Chr4	11228246	T-C	Hetero	INTERGENIC
SBS	Chr4	11534600	T-A	Hetero	INTERGENIC
SBS	Chr4	17312190	T-A	Hetero	INTRON
SBS	Chr4	17840633	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g089400
SBS	Chr4	23366383	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	28454364	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	31473357	T-C	Homo	INTERGENIC
SBS	Chr4	31620825	T-C	Hetero	INTERGENIC
SBS	Chr5	258568	A-G	Hetero	INTRON
SBS	Chr5	18526106	G-T	Hetero	INTRON
SBS	Chr5	24776630	G-T	Hetero	INTERGENIC
SBS	Chr5	28390599	T-C	Hetero	INTRON
SBS	Chr5	29928117	A-T	Homo	INTERGENIC
SBS	Chr6	345393	G-A	Homo	INTERGENIC
SBS	Chr6	1667280	T-C	Hetero	INTRON
SBS	Chr6	2562993	C-A	Homo	UTR_3_PRIME
SBS	Chr6	10831672	A-T	Hetero	INTERGENIC
SBS	Chr6	10843239	G-A	Homo	INTERGENIC
SBS	Chr6	14662324	A-G	Hetero	INTERGENIC
SBS	Chr7	13664165	G-A	Hetero	INTERGENIC
SBS	Chr7	29345891	G-A	Hetero	INTERGENIC
SBS	Chr8	8007831	G-T	Hetero	INTERGENIC
SBS	Chr8	19453375	G-T	Hetero	INTERGENIC
SBS	Chr9	1483986	A-T	Hetero	INTERGENIC
SBS	Chr9	6454781	A-G	Hetero	INTERGENIC
SBS	Chr9	10565255	C-A	Hetero	INTERGENIC
SBS	Chr9	12129839	A-T	Hetero	INTERGENIC
SBS	Chr9	16783666	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g124600
SBS	Chr10	1524728	G-C	Homo	INTERGENIC
SBS	Chr10	16069252	C-A	Hetero	INTERGENIC
SBS	Chr10	19429789	C-T	Hetero	INTERGENIC
SBS	Chr12	2009707	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g031500
SBS	Chr12	2934415	C-T	Hetero	INTRON
SBS	Chr12	15469480	T-C	Homo	INTERGENIC
SBS	Chr12	20442184	T-C	Hetero	INTERGENIC
SBS	Chr12	23449040	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2534779	2534781	2
Deletion	Chr6	2867920	2867933	13
Deletion	Chr5	3153937	3153938	1	OsKitaake05g037700
Deletion	Chr12	3526001	3555000	28999	4
Deletion	Chr11	4491912	4491913	1
Deletion	Chr11	6012502	6012504	2
Deletion	Chr11	6637364	6637365	1	OsKitaake11g078800
Deletion	Chr11	7282630	7282636	6
Deletion	Chr9	14853312	14853342	30
Deletion	Chr2	15110098	15110109	11
Deletion	Chr1	16209149	16209151	2
Deletion	Chr10	19277237	19277239	2
Deletion	Chr2	20531340	20531344	4
Deletion	Chr1	21702254	21702255	1
Deletion	Chr2	22616818	22616825	7	OsKitaake02g219600
Deletion	Chr5	23302185	23302189	4
Deletion	Chr8	23568844	23568851	7	OsKitaake08g181200
Deletion	Chr7	24537351	24537352	1
Deletion	Chr5	27875036	27875037	1	OsKitaake05g255900
Deletion	Chr11	29598358	29598360	2
Deletion	Chr3	32152373	32152378	5
Deletion	Chr3	33740866	33740872	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3116358	3528717	OsKitaake12g045300
Inversion	Chr12	3116889	3553203	2
Inversion	Chr10	9252268	9264970
Inversion	Chr1	33054606	33129188	2
Inversion	Chr1	33054608	33129192	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes