Search Kitaake

Mutant Information

Mutant Name	FN2194-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2194-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 34819012 G-T Hetero INTERGENIC
SBS Chr2 7763973 C-G Hetero INTERGENIC
SBS Chr2 7763974 T-G Hetero INTERGENIC
SBS Chr2 17635433 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g176900
SBS Chr2 17816375 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g178350
SBS Chr2 28048782 G-A Hetero INTERGENIC
SBS Chr2 33093916 C-A Hetero INTERGENIC
SBS Chr3 471384 G-C Homo INTERGENIC
SBS Chr3 6577804 G-T Hetero UTR_5_PRIME
SBS Chr3 23511412 C-A Homo INTERGENIC
SBS Chr4 6952338 G-T Hetero INTERGENIC
SBS Chr4 13879217 A-G Homo INTERGENIC
SBS Chr4 17687789 C-G Hetero INTERGENIC
SBS Chr4 18777405 G-T Hetero INTERGENIC
SBS Chr4 19743516 C-G Hetero INTRON
SBS Chr5 9853861 T-G Hetero INTERGENIC
SBS Chr5 14337502 A-C Hetero INTERGENIC
SBS Chr5 15167348 C-T Hetero INTERGENIC
SBS Chr5 20876226 T-C Hetero INTERGENIC
SBS Chr6 10361900 C-T Hetero INTERGENIC
SBS Chr6 11077538 G-A Hetero INTERGENIC
SBS Chr6 15721916 G-T Hetero INTERGENIC
SBS Chr7 2631045 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g034400
SBS Chr7 4241281 T-G Hetero INTERGENIC
SBS Chr7 7036875 G-A Hetero INTERGENIC
SBS Chr7 10187857 T-A Hetero INTERGENIC
SBS Chr7 12781156 C-T Hetero INTERGENIC
SBS Chr7 19659870 G-A Hetero INTERGENIC
SBS Chr8 17324720 C-T Hetero INTERGENIC
SBS Chr8 19820254 G-A Hetero SPLICE_SITE_REGION
SBS Chr9 4589169 C-T Homo INTERGENIC
SBS Chr9 10074791 C-T Hetero INTERGENIC
SBS Chr9 17496042 T-G Hetero INTRON
SBS Chr9 21537362 C-T Hetero INTERGENIC
SBS Chr10 886925 A-C Hetero INTERGENIC
SBS Chr10 886927 G-T Hetero INTERGENIC
SBS Chr11 6561683 T-G Hetero INTERGENIC
SBS Chr11 7624368 G-T Hetero INTERGENIC
SBS Chr11 8989270 G-A Hetero INTERGENIC
SBS Chr11 12559883 G-A Hetero INTERGENIC
SBS Chr11 24357810 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g195700
SBS Chr11 28254135 C-A Homo INTERGENIC
SBS Chr12 8557631 G-A Hetero INTERGENIC
SBS Chr12 14581458 T-G Hetero SPLICE_SITE_REGION
SBS Chr12 14930000 C-A Hetero INTERGENIC
SBS Chr12 16970890 G-T Hetero INTERGENIC
SBS Chr12 20467668 C-G Homo INTERGENIC
SBS Chr12 24943285 G-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1882001 1926000 43999 3
Deletion Chr2 2886626 2886629 3
Deletion Chr4 6707435 6707439 4
Deletion Chr7 10995604 10995610 6
Deletion Chr3 17742475 17742476 1
Deletion Chr10 17822654 17822681 27
Deletion Chr7 20342250 20342255 5
Deletion Chr9 21464943 21464946 3
Deletion Chr8 26491228 26491236 8
Deletion Chr6 28149409 28149412 3
Deletion Chr6 30769001 30796000 26999 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 14494661 14494664 2
Insertion Chr10 7757544 7757547 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34819012	G-T	Hetero	INTERGENIC
SBS	Chr2	7763973	C-G	Hetero	INTERGENIC
SBS	Chr2	7763974	T-G	Hetero	INTERGENIC
SBS	Chr2	17635433	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g176900
SBS	Chr2	17816375	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g178350
SBS	Chr2	28048782	G-A	Hetero	INTERGENIC
SBS	Chr2	33093916	C-A	Hetero	INTERGENIC
SBS	Chr3	471384	G-C	Homo	INTERGENIC
SBS	Chr3	6577804	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	23511412	C-A	Homo	INTERGENIC
SBS	Chr4	6952338	G-T	Hetero	INTERGENIC
SBS	Chr4	13879217	A-G	Homo	INTERGENIC
SBS	Chr4	17687789	C-G	Hetero	INTERGENIC
SBS	Chr4	18777405	G-T	Hetero	INTERGENIC
SBS	Chr4	19743516	C-G	Hetero	INTRON
SBS	Chr5	9853861	T-G	Hetero	INTERGENIC
SBS	Chr5	14337502	A-C	Hetero	INTERGENIC
SBS	Chr5	15167348	C-T	Hetero	INTERGENIC
SBS	Chr5	20876226	T-C	Hetero	INTERGENIC
SBS	Chr6	10361900	C-T	Hetero	INTERGENIC
SBS	Chr6	11077538	G-A	Hetero	INTERGENIC
SBS	Chr6	15721916	G-T	Hetero	INTERGENIC
SBS	Chr7	2631045	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g034400
SBS	Chr7	4241281	T-G	Hetero	INTERGENIC
SBS	Chr7	7036875	G-A	Hetero	INTERGENIC
SBS	Chr7	10187857	T-A	Hetero	INTERGENIC
SBS	Chr7	12781156	C-T	Hetero	INTERGENIC
SBS	Chr7	19659870	G-A	Hetero	INTERGENIC
SBS	Chr8	17324720	C-T	Hetero	INTERGENIC
SBS	Chr8	19820254	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr9	4589169	C-T	Homo	INTERGENIC
SBS	Chr9	10074791	C-T	Hetero	INTERGENIC
SBS	Chr9	17496042	T-G	Hetero	INTRON
SBS	Chr9	21537362	C-T	Hetero	INTERGENIC
SBS	Chr10	886925	A-C	Hetero	INTERGENIC
SBS	Chr10	886927	G-T	Hetero	INTERGENIC
SBS	Chr11	6561683	T-G	Hetero	INTERGENIC
SBS	Chr11	7624368	G-T	Hetero	INTERGENIC
SBS	Chr11	8989270	G-A	Hetero	INTERGENIC
SBS	Chr11	12559883	G-A	Hetero	INTERGENIC
SBS	Chr11	24357810	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g195700
SBS	Chr11	28254135	C-A	Homo	INTERGENIC
SBS	Chr12	8557631	G-A	Hetero	INTERGENIC
SBS	Chr12	14581458	T-G	Hetero	SPLICE_SITE_REGION
SBS	Chr12	14930000	C-A	Hetero	INTERGENIC
SBS	Chr12	16970890	G-T	Hetero	INTERGENIC
SBS	Chr12	20467668	C-G	Homo	INTERGENIC
SBS	Chr12	24943285	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1882001	1926000	43999	3
Deletion	Chr2	2886626	2886629	3
Deletion	Chr4	6707435	6707439	4
Deletion	Chr7	10995604	10995610	6
Deletion	Chr3	17742475	17742476	1
Deletion	Chr10	17822654	17822681	27
Deletion	Chr7	20342250	20342255	5
Deletion	Chr9	21464943	21464946	3
Deletion	Chr8	26491228	26491236	8
Deletion	Chr6	28149409	28149412	3
Deletion	Chr6	30769001	30796000	26999	5

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes