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Mutant Information

Mutant Name	FN2195-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2195-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4689844 T-A Homo INTRON
SBS Chr1 6153581 G-A Homo INTERGENIC
SBS Chr1 34031803 G-A Homo UTR_3_PRIME
SBS Chr2 7407541 T-A Hetero INTERGENIC
SBS Chr2 17175637 A-T Hetero INTERGENIC
SBS Chr2 17936742 G-A Hetero INTERGENIC
SBS Chr3 9014450 A-G Hetero STOP_LOST OsKitaake03g123700
SBS Chr3 17124993 C-T Hetero INTERGENIC
SBS Chr3 19240053 C-T Hetero INTERGENIC
SBS Chr3 23866212 C-T Hetero INTERGENIC
SBS Chr3 28550662 G-T Hetero INTERGENIC
SBS Chr4 3322002 G-T Hetero INTERGENIC
SBS Chr4 8462828 G-T Homo INTERGENIC
SBS Chr4 10431575 A-G Homo INTERGENIC
SBS Chr4 12162135 T-A Homo INTERGENIC
SBS Chr4 12209011 G-A Homo INTERGENIC
SBS Chr4 17925342 G-C Homo INTERGENIC
SBS Chr4 27672421 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g203600
SBS Chr5 5456487 C-A Homo INTERGENIC
SBS Chr5 9972673 T-A Homo INTERGENIC
SBS Chr5 12322590 C-T Hetero INTERGENIC
SBS Chr5 27184962 C-G Hetero INTRON
SBS Chr6 2315460 T-C Hetero INTERGENIC
SBS Chr6 12262012 A-G Hetero INTERGENIC
SBS Chr6 13140067 G-A Homo INTERGENIC
SBS Chr6 18994248 C-A Homo INTERGENIC
SBS Chr6 23231580 T-C Hetero INTERGENIC
SBS Chr6 26468546 C-T Hetero INTERGENIC
SBS Chr6 30815025 C-T Hetero INTERGENIC
SBS Chr7 17355942 T-C Hetero INTRON
SBS Chr7 17664880 T-A Hetero INTERGENIC
SBS Chr7 19416965 T-A Hetero INTERGENIC
SBS Chr7 21339388 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g177200
SBS Chr7 28122736 C-G Hetero INTRON
SBS Chr8 20531475 T-C Homo INTERGENIC
SBS Chr8 27306981 A-G Hetero INTERGENIC
SBS Chr9 1239782 A-G Hetero INTRON
SBS Chr10 4700465 A-G Homo INTERGENIC
SBS Chr10 9589996 G-T Hetero INTERGENIC
SBS Chr11 3518687 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g049001
SBS Chr11 15346072 A-G Hetero INTERGENIC
SBS Chr11 19561662 A-G Homo INTERGENIC
SBS Chr11 22590212 T-C Homo INTERGENIC
SBS Chr11 23844151 G-A Homo INTERGENIC
SBS Chr12 5411094 C-T Hetero INTERGENIC
SBS Chr12 19903943 A-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1156642 1156851 209
Deletion Chr3 2777801 2777810 9
Deletion Chr5 4768401 4768404 3
Deletion Chr8 4979658 4979659 1
Deletion Chr4 5033001 5064000 30999 2
Deletion Chr6 20204336 20204384 48
Deletion Chr10 20248201 20248203 2
Deletion Chr1 23717000 23717008 8
Deletion Chr6 27875511 27875514 3
Deletion Chr4 30265010 30265021 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2270286 2270290 3
Insertion Chr5 7007137 7007140 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 4261163 5064292
Inversion Chr2 13957343 14911989 OsKitaake02g150900
Inversion Chr2 13957346 14911999 OsKitaake02g150900
Inversion Chr1 22932815 23720099
Inversion Chr1 23083798 23703903

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 4075391 Chr1 22973316
Translocation Chr4 5033508 Chr1 23083802 OsKitaake04g023600
Translocation Chr5 5040824 Chr4 13991123
Translocation Chr5 5041524 Chr4 13989130
Translocation Chr6 7904756 Chr1 22973296
Translocation Chr6 7904760 Chr1 22932827
Translocation Chr12 11831454 Chr4 2796425
Translocation Chr11 22006666 Chr5 5040841

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4689844	T-A	Homo	INTRON
SBS	Chr1	6153581	G-A	Homo	INTERGENIC
SBS	Chr1	34031803	G-A	Homo	UTR_3_PRIME
SBS	Chr2	7407541	T-A	Hetero	INTERGENIC
SBS	Chr2	17175637	A-T	Hetero	INTERGENIC
SBS	Chr2	17936742	G-A	Hetero	INTERGENIC
SBS	Chr3	9014450	A-G	Hetero	STOP_LOST	OsKitaake03g123700
SBS	Chr3	17124993	C-T	Hetero	INTERGENIC
SBS	Chr3	19240053	C-T	Hetero	INTERGENIC
SBS	Chr3	23866212	C-T	Hetero	INTERGENIC
SBS	Chr3	28550662	G-T	Hetero	INTERGENIC
SBS	Chr4	3322002	G-T	Hetero	INTERGENIC
SBS	Chr4	8462828	G-T	Homo	INTERGENIC
SBS	Chr4	10431575	A-G	Homo	INTERGENIC
SBS	Chr4	12162135	T-A	Homo	INTERGENIC
SBS	Chr4	12209011	G-A	Homo	INTERGENIC
SBS	Chr4	17925342	G-C	Homo	INTERGENIC
SBS	Chr4	27672421	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g203600
SBS	Chr5	5456487	C-A	Homo	INTERGENIC
SBS	Chr5	9972673	T-A	Homo	INTERGENIC
SBS	Chr5	12322590	C-T	Hetero	INTERGENIC
SBS	Chr5	27184962	C-G	Hetero	INTRON
SBS	Chr6	2315460	T-C	Hetero	INTERGENIC
SBS	Chr6	12262012	A-G	Hetero	INTERGENIC
SBS	Chr6	13140067	G-A	Homo	INTERGENIC
SBS	Chr6	18994248	C-A	Homo	INTERGENIC
SBS	Chr6	23231580	T-C	Hetero	INTERGENIC
SBS	Chr6	26468546	C-T	Hetero	INTERGENIC
SBS	Chr6	30815025	C-T	Hetero	INTERGENIC
SBS	Chr7	17355942	T-C	Hetero	INTRON
SBS	Chr7	17664880	T-A	Hetero	INTERGENIC
SBS	Chr7	19416965	T-A	Hetero	INTERGENIC
SBS	Chr7	21339388	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g177200
SBS	Chr7	28122736	C-G	Hetero	INTRON
SBS	Chr8	20531475	T-C	Homo	INTERGENIC
SBS	Chr8	27306981	A-G	Hetero	INTERGENIC
SBS	Chr9	1239782	A-G	Hetero	INTRON
SBS	Chr10	4700465	A-G	Homo	INTERGENIC
SBS	Chr10	9589996	G-T	Hetero	INTERGENIC
SBS	Chr11	3518687	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g049001
SBS	Chr11	15346072	A-G	Hetero	INTERGENIC
SBS	Chr11	19561662	A-G	Homo	INTERGENIC
SBS	Chr11	22590212	T-C	Homo	INTERGENIC
SBS	Chr11	23844151	G-A	Homo	INTERGENIC
SBS	Chr12	5411094	C-T	Hetero	INTERGENIC
SBS	Chr12	19903943	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1156642	1156851	209
Deletion	Chr3	2777801	2777810	9
Deletion	Chr5	4768401	4768404	3
Deletion	Chr8	4979658	4979659	1
Deletion	Chr4	5033001	5064000	30999	2
Deletion	Chr6	20204336	20204384	48
Deletion	Chr10	20248201	20248203	2
Deletion	Chr1	23717000	23717008	8
Deletion	Chr6	27875511	27875514	3
Deletion	Chr4	30265010	30265021	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	4261163	5064292
Inversion	Chr2	13957343	14911989	OsKitaake02g150900
Inversion	Chr2	13957346	14911999	OsKitaake02g150900
Inversion	Chr1	22932815	23720099
Inversion	Chr1	23083798	23703903

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes