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| Mutant Information |
|---|
| Mutant Name | FN2197-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2197-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 39423853 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 2353299 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 2648201 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 11249621 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g130900 |
| SBS | Chr2 | 23984619 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 24275601 | G-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 27140051 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 8432527 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21229965 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32034767 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1868262 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 5438053 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 12595334 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 19531432 | A-C | Homo | INTERGENIC | |
| SBS | Chr5 | 14044118 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 24324788 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 26326238 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 7428205 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24810331 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22162386 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g186850 |
| SBS | Chr8 | 16555950 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 11305226 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 272843 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2835949 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 20814732 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 11758140 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18056671 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21563205 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 24385621 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25096756 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 12080946 | C-A | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1140001 | 1173000 | 32999 | 2 |
| Deletion | Chr4 | 3508001 | 3713000 | 204999 | 8 |
| Deletion | Chr4 | 4493001 | 4656000 | 162999 | OsKitaake04g021850 |
| Deletion | Chr8 | 15035797 | 15035826 | 29 | |
| Deletion | Chr8 | 18875001 | 18889000 | 13999 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 2660991 | 2660994 | 2 | |
| Insertion | Chr1 | 39814436 | 39814438 | 1 | |
| Insertion | Chr9 | 2740684 | 2740686 | 1 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 3508343 | 4495389 | |
| Inversion | Chr4 | 3708447 | 4657760 | |
| Inversion | Chr5 | 16908731 | 16919374 | OsKitaake05g129500 |
| Inversion | Chr5 | 16909849 | 16919375 | |
| Inversion | Chr11 | 17260313 | 17304973 | OsKitaake11g135000 |
| Inversion | Chr11 | 17260321 | 17304982 | OsKitaake11g135000 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 4655765 | Chr1 | 10877375 | |
| Translocation | Chr4 | 4657757 | Chr1 | 10877373 | |
| Translocation | Chr11 | 23996953 | Chr5 | 29873609 | OsKitaake11g192800 |
| Translocation | Chr11 | 23996960 | Chr5 | 29873111 | OsKitaake11g192800 |