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| Mutant Information |
|---|
| Mutant Name | FN2198-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2198-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7514345 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 31548372 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32296331 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g326000 |
| SBS | Chr1 | 32333753 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 14317567 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 6672687 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4003960 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 4003961 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 4358230 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 6889468 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14599054 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 15651633 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 16754280 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 25477887 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 5252283 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22595032 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 28038339 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17963649 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 28560165 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 11754609 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4172313 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8980534 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 904275 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1116577 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18056633 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 18056634 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 21477968 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 2910195 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 8684694 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 14421063 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 24574573 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18755815 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18755819 | G-T | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 2177014 | 2177025 | 11 | |
| Deletion | Chr4 | 19489911 | 19489913 | 2 | |
| Deletion | Chr4 | 24547377 | 24547380 | 3 | |
| Deletion | Chr3 | 24861246 | 24861257 | 11 | OsKitaake03g264500 |
| Deletion | Chr4 | 25260353 | 25260355 | 2 | |
| Deletion | Chr4 | 28345460 | 28345467 | 7 | OsKitaake04g211200 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 9914566 | 9914569 | 2 | |
| Insertion | Chr8 | 19930653 | 19930658 | 4 | |
| Insertion | Chr11 | 23173815 | 23173819 | 3 | |
| Insertion | Chr1 | 39162377 | 39162379 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 7374765 | 7724493 | OsKitaake08g071000 |
| Inversion | Chr12 | 24509402 | 24781900 | OsKitaake12g197800 |