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Mutant Information

Mutant Name	FN2199-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2199-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8489872 A-T Hetero INTERGENIC
SBS Chr1 13625491 A-C Homo NON_SYNONYMOUS_CODING OsKitaake01g158500
SBS Chr1 23580728 G-T Hetero INTERGENIC
SBS Chr1 23580729 A-T Hetero INTERGENIC
SBS Chr1 27000967 T-G Hetero INTERGENIC
SBS Chr1 27235735 G-A Hetero INTERGENIC
SBS Chr1 35894990 G-T Hetero INTRON
SBS Chr2 12822040 A-T Hetero INTERGENIC
SBS Chr2 15322930 G-A Hetero INTERGENIC
SBS Chr2 16253423 G-C Hetero INTERGENIC
SBS Chr2 18602707 C-G Hetero INTERGENIC
SBS Chr3 27216338 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g280400
SBS Chr3 34565867 G-C Hetero INTERGENIC
SBS Chr4 4485801 C-T Homo INTERGENIC
SBS Chr4 6133289 T-A Hetero INTERGENIC
SBS Chr4 18316592 C-A Homo INTERGENIC
SBS Chr4 27458014 T-A Hetero INTRON
SBS Chr5 4601952 T-A Hetero INTERGENIC
SBS Chr5 23129762 A-C Hetero INTERGENIC
SBS Chr5 29183280 C-T Homo INTERGENIC
SBS Chr6 22187738 T-C Hetero INTERGENIC
SBS Chr7 6299233 C-T Hetero INTERGENIC
SBS Chr7 12535498 T-C Hetero INTERGENIC
SBS Chr7 15513421 G-C Hetero INTERGENIC
SBS Chr7 24881832 C-T Hetero INTERGENIC
SBS Chr8 11203847 C-A Hetero INTRON
SBS Chr8 11677167 A-T Hetero INTERGENIC
SBS Chr8 13913248 G-A Hetero INTERGENIC
SBS Chr8 19573070 G-A Hetero INTERGENIC
SBS Chr9 703192 T-C Hetero INTERGENIC
SBS Chr9 5877828 A-G Hetero INTERGENIC
SBS Chr9 11373513 G-A Hetero INTERGENIC
SBS Chr9 16472263 G-A Hetero INTERGENIC
SBS Chr10 7907953 G-A Homo INTERGENIC
SBS Chr10 18784027 T-A Hetero INTRON
SBS Chr10 20814934 C-T Hetero UTR_3_PRIME
SBS Chr11 9445996 C-A Hetero SYNONYMOUS_CODING
SBS Chr11 11842811 C-T Hetero INTERGENIC
SBS Chr11 14324883 C-T Hetero UTR_3_PRIME
SBS Chr11 15308224 C-T Hetero INTERGENIC
SBS Chr12 5235852 C-G Hetero INTERGENIC
SBS Chr12 16803601 G-A Hetero INTERGENIC
SBS Chr12 17429057 A-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2645368 2645370 2
Deletion Chr4 3451826 3451828 2
Deletion Chr11 5442320 5442322 2
Deletion Chr11 5567858 5567860 2
Deletion Chr10 9580787 9580789 2
Deletion Chr6 19699910 19699912 2
Deletion Chr2 25243786 25243792 6
Deletion Chr1 26615054 26615058 4
Deletion Chr1 41786661 41786662 1
Deletion Chr1 43263055 43263056 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36444610 36444614 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 13797707 14284850

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8489872	A-T	Hetero	INTERGENIC
SBS	Chr1	13625491	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g158500
SBS	Chr1	23580728	G-T	Hetero	INTERGENIC
SBS	Chr1	23580729	A-T	Hetero	INTERGENIC
SBS	Chr1	27000967	T-G	Hetero	INTERGENIC
SBS	Chr1	27235735	G-A	Hetero	INTERGENIC
SBS	Chr1	35894990	G-T	Hetero	INTRON
SBS	Chr2	12822040	A-T	Hetero	INTERGENIC
SBS	Chr2	15322930	G-A	Hetero	INTERGENIC
SBS	Chr2	16253423	G-C	Hetero	INTERGENIC
SBS	Chr2	18602707	C-G	Hetero	INTERGENIC
SBS	Chr3	27216338	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g280400
SBS	Chr3	34565867	G-C	Hetero	INTERGENIC
SBS	Chr4	4485801	C-T	Homo	INTERGENIC
SBS	Chr4	6133289	T-A	Hetero	INTERGENIC
SBS	Chr4	18316592	C-A	Homo	INTERGENIC
SBS	Chr4	27458014	T-A	Hetero	INTRON
SBS	Chr5	4601952	T-A	Hetero	INTERGENIC
SBS	Chr5	23129762	A-C	Hetero	INTERGENIC
SBS	Chr5	29183280	C-T	Homo	INTERGENIC
SBS	Chr6	22187738	T-C	Hetero	INTERGENIC
SBS	Chr7	6299233	C-T	Hetero	INTERGENIC
SBS	Chr7	12535498	T-C	Hetero	INTERGENIC
SBS	Chr7	15513421	G-C	Hetero	INTERGENIC
SBS	Chr7	24881832	C-T	Hetero	INTERGENIC
SBS	Chr8	11203847	C-A	Hetero	INTRON
SBS	Chr8	11677167	A-T	Hetero	INTERGENIC
SBS	Chr8	13913248	G-A	Hetero	INTERGENIC
SBS	Chr8	19573070	G-A	Hetero	INTERGENIC
SBS	Chr9	703192	T-C	Hetero	INTERGENIC
SBS	Chr9	5877828	A-G	Hetero	INTERGENIC
SBS	Chr9	11373513	G-A	Hetero	INTERGENIC
SBS	Chr9	16472263	G-A	Hetero	INTERGENIC
SBS	Chr10	7907953	G-A	Homo	INTERGENIC
SBS	Chr10	18784027	T-A	Hetero	INTRON
SBS	Chr10	20814934	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	9445996	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	11842811	C-T	Hetero	INTERGENIC
SBS	Chr11	14324883	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	15308224	C-T	Hetero	INTERGENIC
SBS	Chr12	5235852	C-G	Hetero	INTERGENIC
SBS	Chr12	16803601	G-A	Hetero	INTERGENIC
SBS	Chr12	17429057	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2645368	2645370	2
Deletion	Chr4	3451826	3451828	2
Deletion	Chr11	5442320	5442322	2
Deletion	Chr11	5567858	5567860	2
Deletion	Chr10	9580787	9580789	2
Deletion	Chr6	19699910	19699912	2
Deletion	Chr2	25243786	25243792	6
Deletion	Chr1	26615054	26615058	4
Deletion	Chr1	41786661	41786662	1
Deletion	Chr1	43263055	43263056	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	13797707	14284850

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes