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Mutant Information

Mutant Name	FN2200-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2200-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1098579 T-A Hetero INTERGENIC
SBS Chr1 2930389 A-T Hetero INTERGENIC
SBS Chr1 12737038 G-A Homo INTRON
SBS Chr1 16910544 T-C Hetero INTERGENIC
SBS Chr1 17253538 C-A Hetero INTERGENIC
SBS Chr1 17301414 G-A Hetero INTERGENIC
SBS Chr1 25728607 G-A Homo INTERGENIC
SBS Chr1 32176294 A-T Hetero START_GAINED
SBS Chr1 33792767 A-G Homo INTRON
SBS Chr1 43988362 C-T Homo INTERGENIC
SBS Chr1 43988367 A-T Homo INTERGENIC
SBS Chr2 2782944 G-A Hetero INTERGENIC
SBS Chr2 17495883 C-T Hetero INTERGENIC
SBS Chr2 20113949 T-C Hetero INTERGENIC
SBS Chr2 22649400 C-T Hetero INTERGENIC
SBS Chr2 36796595 A-G Hetero UTR_3_PRIME
SBS Chr3 985274 T-C Hetero INTERGENIC
SBS Chr3 1095864 G-A Homo INTRON
SBS Chr3 1130554 G-C Hetero INTERGENIC
SBS Chr3 37078047 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g414400
SBS Chr4 6447836 C-T Hetero INTERGENIC
SBS Chr4 10077579 C-T Homo INTRON
SBS Chr4 14045759 C-T Hetero INTERGENIC
SBS Chr4 18325087 T-A Hetero INTERGENIC
SBS Chr4 25890684 T-G Hetero UTR_3_PRIME
SBS Chr4 29038454 A-T Homo INTERGENIC
SBS Chr5 5709274 G-T Hetero INTERGENIC
SBS Chr6 2970381 A-G Hetero INTERGENIC
SBS Chr6 9182479 G-T Hetero INTERGENIC
SBS Chr6 15166251 C-T Hetero INTRON
SBS Chr7 9508867 G-A Hetero INTERGENIC
SBS Chr7 9658834 C-T Hetero INTERGENIC
SBS Chr7 16550889 G-A Hetero INTERGENIC
SBS Chr8 6592328 C-T Hetero INTERGENIC
SBS Chr8 8851186 C-T Hetero INTERGENIC
SBS Chr8 10160452 A-G Homo INTERGENIC
SBS Chr8 24013833 T-A Homo INTRON
SBS Chr9 2608197 C-A Hetero INTERGENIC
SBS Chr9 5497407 A-G Homo INTERGENIC
SBS Chr9 6867820 G-A Homo INTERGENIC
SBS Chr10 3354970 C-T Hetero INTERGENIC
SBS Chr10 7175709 C-T Hetero INTERGENIC
SBS Chr10 9958796 A-G Hetero INTERGENIC
SBS Chr11 1567957 G-A Hetero INTERGENIC
SBS Chr11 3640678 G-T Homo INTRON
SBS Chr11 3640679 A-T Homo INTRON
SBS Chr11 6329493 G-T Hetero UTR_3_PRIME
SBS Chr11 8542398 C-T Hetero INTERGENIC
SBS Chr11 9011775 T-C Homo INTERGENIC
SBS Chr11 14043488 C-A Homo INTERGENIC
SBS Chr12 6031320 G-A Homo INTERGENIC
SBS Chr12 6287851 G-A Hetero UTR_3_PRIME
SBS Chr12 7769565 T-A Homo INTERGENIC
SBS Chr12 11263225 G-A Hetero INTERGENIC
SBS Chr12 11272133 G-C Hetero INTERGENIC
SBS Chr12 15076020 C-T Hetero INTERGENIC
SBS Chr12 17598336 C-T Hetero INTERGENIC
SBS Chr12 22017378 T-A Hetero UTR_3_PRIME

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 210410 210420 10
Deletion Chr6 1326577 1326579 2
Deletion Chr12 2135636 2135643 7
Deletion Chr12 7999508 7999510 2
Deletion Chr1 8800265 8800267 2
Deletion Chr6 9365907 9365909 2 OsKitaake06g111000
Deletion Chr11 10282680 10282686 6
Deletion Chr6 11461001 11475000 13999 OsKitaake06g126700
Deletion Chr4 16102649 16102656 7
Deletion Chr1 16392183 16392194 11
Deletion Chr11 17717882 17718008 126
Deletion Chr8 20485787 20485788 1
Deletion Chr5 22574001 22683000 108999 12
Deletion Chr11 24846243 24846245 2
Deletion Chr7 27860498 27860508 10
Deletion Chr1 32291323 32291326 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 777518 777521 2
Insertion Chr9 14647933 14647936 2
Insertion Chr11 26444217 26444221 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 3745181 4477440
Inversion Chr3 36282884 36512466 2
Inversion Chr3 36282890 36512471 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1098579	T-A	Hetero	INTERGENIC
SBS	Chr1	2930389	A-T	Hetero	INTERGENIC
SBS	Chr1	12737038	G-A	Homo	INTRON
SBS	Chr1	16910544	T-C	Hetero	INTERGENIC
SBS	Chr1	17253538	C-A	Hetero	INTERGENIC
SBS	Chr1	17301414	G-A	Hetero	INTERGENIC
SBS	Chr1	25728607	G-A	Homo	INTERGENIC
SBS	Chr1	32176294	A-T	Hetero	START_GAINED
SBS	Chr1	33792767	A-G	Homo	INTRON
SBS	Chr1	43988362	C-T	Homo	INTERGENIC
SBS	Chr1	43988367	A-T	Homo	INTERGENIC
SBS	Chr2	2782944	G-A	Hetero	INTERGENIC
SBS	Chr2	17495883	C-T	Hetero	INTERGENIC
SBS	Chr2	20113949	T-C	Hetero	INTERGENIC
SBS	Chr2	22649400	C-T	Hetero	INTERGENIC
SBS	Chr2	36796595	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	985274	T-C	Hetero	INTERGENIC
SBS	Chr3	1095864	G-A	Homo	INTRON
SBS	Chr3	1130554	G-C	Hetero	INTERGENIC
SBS	Chr3	37078047	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g414400
SBS	Chr4	6447836	C-T	Hetero	INTERGENIC
SBS	Chr4	10077579	C-T	Homo	INTRON
SBS	Chr4	14045759	C-T	Hetero	INTERGENIC
SBS	Chr4	18325087	T-A	Hetero	INTERGENIC
SBS	Chr4	25890684	T-G	Hetero	UTR_3_PRIME
SBS	Chr4	29038454	A-T	Homo	INTERGENIC
SBS	Chr5	5709274	G-T	Hetero	INTERGENIC
SBS	Chr6	2970381	A-G	Hetero	INTERGENIC
SBS	Chr6	9182479	G-T	Hetero	INTERGENIC
SBS	Chr6	15166251	C-T	Hetero	INTRON
SBS	Chr7	9508867	G-A	Hetero	INTERGENIC
SBS	Chr7	9658834	C-T	Hetero	INTERGENIC
SBS	Chr7	16550889	G-A	Hetero	INTERGENIC
SBS	Chr8	6592328	C-T	Hetero	INTERGENIC
SBS	Chr8	8851186	C-T	Hetero	INTERGENIC
SBS	Chr8	10160452	A-G	Homo	INTERGENIC
SBS	Chr8	24013833	T-A	Homo	INTRON
SBS	Chr9	2608197	C-A	Hetero	INTERGENIC
SBS	Chr9	5497407	A-G	Homo	INTERGENIC
SBS	Chr9	6867820	G-A	Homo	INTERGENIC
SBS	Chr10	3354970	C-T	Hetero	INTERGENIC
SBS	Chr10	7175709	C-T	Hetero	INTERGENIC
SBS	Chr10	9958796	A-G	Hetero	INTERGENIC
SBS	Chr11	1567957	G-A	Hetero	INTERGENIC
SBS	Chr11	3640678	G-T	Homo	INTRON
SBS	Chr11	3640679	A-T	Homo	INTRON
SBS	Chr11	6329493	G-T	Hetero	UTR_3_PRIME
SBS	Chr11	8542398	C-T	Hetero	INTERGENIC
SBS	Chr11	9011775	T-C	Homo	INTERGENIC
SBS	Chr11	14043488	C-A	Homo	INTERGENIC
SBS	Chr12	6031320	G-A	Homo	INTERGENIC
SBS	Chr12	6287851	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	7769565	T-A	Homo	INTERGENIC
SBS	Chr12	11263225	G-A	Hetero	INTERGENIC
SBS	Chr12	11272133	G-C	Hetero	INTERGENIC
SBS	Chr12	15076020	C-T	Hetero	INTERGENIC
SBS	Chr12	17598336	C-T	Hetero	INTERGENIC
SBS	Chr12	22017378	T-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	210410	210420	10
Deletion	Chr6	1326577	1326579	2
Deletion	Chr12	2135636	2135643	7
Deletion	Chr12	7999508	7999510	2
Deletion	Chr1	8800265	8800267	2
Deletion	Chr6	9365907	9365909	2	OsKitaake06g111000
Deletion	Chr11	10282680	10282686	6
Deletion	Chr6	11461001	11475000	13999	OsKitaake06g126700
Deletion	Chr4	16102649	16102656	7
Deletion	Chr1	16392183	16392194	11
Deletion	Chr11	17717882	17718008	126
Deletion	Chr8	20485787	20485788	1
Deletion	Chr5	22574001	22683000	108999	12
Deletion	Chr11	24846243	24846245	2
Deletion	Chr7	27860498	27860508	10
Deletion	Chr1	32291323	32291326	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	3745181	4477440
Inversion	Chr3	36282884	36512466	2
Inversion	Chr3	36282890	36512471	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes