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Mutant Information

Mutant Name	FN2201-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2201-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8746867 C-T Homo INTERGENIC
SBS Chr1 13014543 G-T Hetero INTERGENIC
SBS Chr1 39477714 C-T Hetero INTERGENIC
SBS Chr2 10244685 T-C Homo INTRON
SBS Chr3 6838563 A-G Hetero INTRON
SBS Chr3 7642914 C-A Hetero INTERGENIC
SBS Chr3 14116605 C-T Hetero INTERGENIC
SBS Chr3 17771148 G-T Hetero INTERGENIC
SBS Chr3 24882160 C-T Hetero INTRON
SBS Chr4 13298251 A-T Homo INTERGENIC
SBS Chr4 14709552 T-C Homo INTERGENIC
SBS Chr4 24625451 T-G Hetero INTERGENIC
SBS Chr4 34236000 G-A Hetero INTERGENIC
SBS Chr5 27407912 C-T Hetero INTERGENIC
SBS Chr6 7845782 T-C Hetero INTERGENIC
SBS Chr7 7983224 G-A Hetero INTERGENIC
SBS Chr7 14507783 C-A Hetero INTERGENIC
SBS Chr7 19110921 C-A Hetero INTERGENIC
SBS Chr7 20926970 C-T Homo INTERGENIC
SBS Chr8 11196 C-T Hetero INTERGENIC
SBS Chr8 3421178 C-T Hetero STOP_GAINED OsKitaake08g038300
SBS Chr8 9087615 T-A Hetero INTERGENIC
SBS Chr8 14251844 C-T Homo INTERGENIC
SBS Chr8 20802996 A-T Homo INTERGENIC
SBS Chr8 22850908 G-A Homo INTERGENIC
SBS Chr9 7497934 T-C Hetero INTERGENIC
SBS Chr9 11734395 T-C Homo INTRON
SBS Chr10 4618826 A-G Homo INTERGENIC
SBS Chr10 9789685 C-A Hetero INTERGENIC
SBS Chr10 23172756 G-T Hetero UTR_3_PRIME
SBS Chr10 23172757 C-T Hetero UTR_3_PRIME
SBS Chr11 6779652 C-A Hetero INTERGENIC
SBS Chr11 19004250 G-A Homo INTERGENIC
SBS Chr11 22828994 T-A Hetero INTERGENIC
SBS Chr11 23549241 A-T Hetero INTERGENIC
SBS Chr11 28376037 T-A Hetero INTERGENIC
SBS Chr12 9728137 T-A Hetero INTERGENIC
SBS Chr12 13433602 T-C Hetero INTRON
SBS Chr12 19019368 C-T Homo INTRON
SBS Chr12 23791475 C-T Homo INTERGENIC
SBS Chr12 26444575 C-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 723602 723626 24
Deletion Chr11 1517761 1517763 2
Deletion Chr3 4981069 4981071 2
Deletion Chr3 8545001 8651000 105999 16
Deletion Chr11 9506001 9541000 34999 3
Deletion Chr1 10479889 10479891 2
Deletion Chr11 11061001 11127000 65999 4
Deletion Chr11 11131001 11212000 80999 4
Deletion Chr10 11600762 11600774 12
Deletion Chr10 18605579 18605588 9
Deletion Chr10 20695156 20695157 1
Deletion Chr2 30237053 30237062 9
Deletion Chr6 30800106 30800109 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25729052 25729055 2
Insertion Chr7 2853246 2853249 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 27370715 27943960 OsKitaake08g233901
Inversion Chr8 27370761 27943974 OsKitaake08g233901

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 3657877 Chr2 17136366 2
Translocation Chr10 3659238 Chr2 22685671 OsKitaake02g220400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8746867	C-T	Homo	INTERGENIC
SBS	Chr1	13014543	G-T	Hetero	INTERGENIC
SBS	Chr1	39477714	C-T	Hetero	INTERGENIC
SBS	Chr2	10244685	T-C	Homo	INTRON
SBS	Chr3	6838563	A-G	Hetero	INTRON
SBS	Chr3	7642914	C-A	Hetero	INTERGENIC
SBS	Chr3	14116605	C-T	Hetero	INTERGENIC
SBS	Chr3	17771148	G-T	Hetero	INTERGENIC
SBS	Chr3	24882160	C-T	Hetero	INTRON
SBS	Chr4	13298251	A-T	Homo	INTERGENIC
SBS	Chr4	14709552	T-C	Homo	INTERGENIC
SBS	Chr4	24625451	T-G	Hetero	INTERGENIC
SBS	Chr4	34236000	G-A	Hetero	INTERGENIC
SBS	Chr5	27407912	C-T	Hetero	INTERGENIC
SBS	Chr6	7845782	T-C	Hetero	INTERGENIC
SBS	Chr7	7983224	G-A	Hetero	INTERGENIC
SBS	Chr7	14507783	C-A	Hetero	INTERGENIC
SBS	Chr7	19110921	C-A	Hetero	INTERGENIC
SBS	Chr7	20926970	C-T	Homo	INTERGENIC
SBS	Chr8	11196	C-T	Hetero	INTERGENIC
SBS	Chr8	3421178	C-T	Hetero	STOP_GAINED	OsKitaake08g038300
SBS	Chr8	9087615	T-A	Hetero	INTERGENIC
SBS	Chr8	14251844	C-T	Homo	INTERGENIC
SBS	Chr8	20802996	A-T	Homo	INTERGENIC
SBS	Chr8	22850908	G-A	Homo	INTERGENIC
SBS	Chr9	7497934	T-C	Hetero	INTERGENIC
SBS	Chr9	11734395	T-C	Homo	INTRON
SBS	Chr10	4618826	A-G	Homo	INTERGENIC
SBS	Chr10	9789685	C-A	Hetero	INTERGENIC
SBS	Chr10	23172756	G-T	Hetero	UTR_3_PRIME
SBS	Chr10	23172757	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	6779652	C-A	Hetero	INTERGENIC
SBS	Chr11	19004250	G-A	Homo	INTERGENIC
SBS	Chr11	22828994	T-A	Hetero	INTERGENIC
SBS	Chr11	23549241	A-T	Hetero	INTERGENIC
SBS	Chr11	28376037	T-A	Hetero	INTERGENIC
SBS	Chr12	9728137	T-A	Hetero	INTERGENIC
SBS	Chr12	13433602	T-C	Hetero	INTRON
SBS	Chr12	19019368	C-T	Homo	INTRON
SBS	Chr12	23791475	C-T	Homo	INTERGENIC
SBS	Chr12	26444575	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	723602	723626	24
Deletion	Chr11	1517761	1517763	2
Deletion	Chr3	4981069	4981071	2
Deletion	Chr3	8545001	8651000	105999	16
Deletion	Chr11	9506001	9541000	34999	3
Deletion	Chr1	10479889	10479891	2
Deletion	Chr11	11061001	11127000	65999	4
Deletion	Chr11	11131001	11212000	80999	4
Deletion	Chr10	11600762	11600774	12
Deletion	Chr10	18605579	18605588	9
Deletion	Chr10	20695156	20695157	1
Deletion	Chr2	30237053	30237062	9
Deletion	Chr6	30800106	30800109	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	27370715	27943960	OsKitaake08g233901
Inversion	Chr8	27370761	27943974	OsKitaake08g233901

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes