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Mutant Information

Mutant Name	FN2202-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2202-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2521938 C-T Hetero INTERGENIC
SBS Chr1 18817490 G-A Hetero INTERGENIC
SBS Chr2 4972269 A-G Hetero INTERGENIC
SBS Chr2 6933397 G-A Hetero INTERGENIC
SBS Chr2 8574675 T-C Hetero INTRON
SBS Chr2 34554379 G-A Hetero INTERGENIC
SBS Chr3 13586175 C-T Homo INTERGENIC
SBS Chr3 24739169 C-T Hetero INTERGENIC
SBS Chr3 26933963 G-A Homo INTERGENIC
SBS Chr4 10638062 A-G Hetero INTERGENIC
SBS Chr4 19277999 A-G Hetero SYNONYMOUS_CODING
SBS Chr5 2657182 G-A Hetero INTERGENIC
SBS Chr5 14855274 C-T Homo INTERGENIC
SBS Chr5 22628396 T-C Hetero INTERGENIC
SBS Chr5 26569482 G-A Hetero INTERGENIC
SBS Chr6 2326841 C-A Hetero INTERGENIC
SBS Chr6 4881063 C-T Hetero INTERGENIC
SBS Chr6 28936250 G-T Hetero INTERGENIC
SBS Chr7 5875670 T-C Hetero INTERGENIC
SBS Chr7 20346287 G-T Hetero INTRON
SBS Chr8 515466 A-G Hetero INTERGENIC
SBS Chr8 7554879 G-T Hetero INTERGENIC
SBS Chr8 9382339 C-T Hetero INTERGENIC
SBS Chr8 14824859 A-G Hetero INTERGENIC
SBS Chr8 15605195 G-A Hetero INTERGENIC
SBS Chr8 23080601 C-T Hetero INTERGENIC
SBS Chr9 1628355 C-T Hetero INTERGENIC
SBS Chr9 7602058 C-T Homo INTERGENIC
SBS Chr9 8311378 G-A Homo INTERGENIC
SBS Chr9 14709384 G-T Hetero INTERGENIC
SBS Chr9 14796319 C-G Homo INTERGENIC
SBS Chr9 15421153 G-A Hetero INTERGENIC
SBS Chr9 20639983 G-T Hetero INTERGENIC
SBS Chr10 7980396 T-C Hetero INTERGENIC
SBS Chr10 15582664 C-G Hetero INTERGENIC
SBS Chr10 18934002 A-G Homo INTERGENIC
SBS Chr11 16479007 C-T Hetero INTERGENIC
SBS Chr12 1084816 T-C Hetero INTERGENIC
SBS Chr12 6320636 C-T Homo INTERGENIC
SBS Chr12 10235596 G-A Homo INTERGENIC
SBS Chr12 18935088 C-A Hetero INTERGENIC
SBS Chr12 25224099 G-T Hetero INTRON

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3982202 3982213 11
Deletion Chr10 11239801 11239802 1
Deletion Chr3 11362945 11362948 3
Deletion Chr2 14567116 14567118 2
Deletion Chr1 20847101 20847103 2
Deletion Chr2 29119440 29119448 8

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27808369 27808372 2
Insertion Chr2 19467819 19467822 2
Insertion Chr3 15611129 15611132 2
Insertion Chr3 26820982 26820986 3
Insertion Chr4 18053689 18053692 2
Insertion Chr4 19348015 19348018 2
Insertion Chr4 10335373 10335375 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 14780024 Chr1 39953546 2
Translocation Chr3 14786419 Chr1 39953540 OsKitaake01g432300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2521938	C-T	Hetero	INTERGENIC
SBS	Chr1	18817490	G-A	Hetero	INTERGENIC
SBS	Chr2	4972269	A-G	Hetero	INTERGENIC
SBS	Chr2	6933397	G-A	Hetero	INTERGENIC
SBS	Chr2	8574675	T-C	Hetero	INTRON
SBS	Chr2	34554379	G-A	Hetero	INTERGENIC
SBS	Chr3	13586175	C-T	Homo	INTERGENIC
SBS	Chr3	24739169	C-T	Hetero	INTERGENIC
SBS	Chr3	26933963	G-A	Homo	INTERGENIC
SBS	Chr4	10638062	A-G	Hetero	INTERGENIC
SBS	Chr4	19277999	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	2657182	G-A	Hetero	INTERGENIC
SBS	Chr5	14855274	C-T	Homo	INTERGENIC
SBS	Chr5	22628396	T-C	Hetero	INTERGENIC
SBS	Chr5	26569482	G-A	Hetero	INTERGENIC
SBS	Chr6	2326841	C-A	Hetero	INTERGENIC
SBS	Chr6	4881063	C-T	Hetero	INTERGENIC
SBS	Chr6	28936250	G-T	Hetero	INTERGENIC
SBS	Chr7	5875670	T-C	Hetero	INTERGENIC
SBS	Chr7	20346287	G-T	Hetero	INTRON
SBS	Chr8	515466	A-G	Hetero	INTERGENIC
SBS	Chr8	7554879	G-T	Hetero	INTERGENIC
SBS	Chr8	9382339	C-T	Hetero	INTERGENIC
SBS	Chr8	14824859	A-G	Hetero	INTERGENIC
SBS	Chr8	15605195	G-A	Hetero	INTERGENIC
SBS	Chr8	23080601	C-T	Hetero	INTERGENIC
SBS	Chr9	1628355	C-T	Hetero	INTERGENIC
SBS	Chr9	7602058	C-T	Homo	INTERGENIC
SBS	Chr9	8311378	G-A	Homo	INTERGENIC
SBS	Chr9	14709384	G-T	Hetero	INTERGENIC
SBS	Chr9	14796319	C-G	Homo	INTERGENIC
SBS	Chr9	15421153	G-A	Hetero	INTERGENIC
SBS	Chr9	20639983	G-T	Hetero	INTERGENIC
SBS	Chr10	7980396	T-C	Hetero	INTERGENIC
SBS	Chr10	15582664	C-G	Hetero	INTERGENIC
SBS	Chr10	18934002	A-G	Homo	INTERGENIC
SBS	Chr11	16479007	C-T	Hetero	INTERGENIC
SBS	Chr12	1084816	T-C	Hetero	INTERGENIC
SBS	Chr12	6320636	C-T	Homo	INTERGENIC
SBS	Chr12	10235596	G-A	Homo	INTERGENIC
SBS	Chr12	18935088	C-A	Hetero	INTERGENIC
SBS	Chr12	25224099	G-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3982202	3982213	11
Deletion	Chr10	11239801	11239802	1
Deletion	Chr3	11362945	11362948	3
Deletion	Chr2	14567116	14567118	2
Deletion	Chr1	20847101	20847103	2
Deletion	Chr2	29119440	29119448	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	14780024	Chr1	39953546	2
Translocation	Chr3	14786419	Chr1	39953540	OsKitaake01g432300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes