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Mutant Information

Mutant Name	FN2203-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2203-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9897855 C-T Hetero INTRON
SBS Chr1 22700081 C-T Hetero INTERGENIC
SBS Chr1 32381476 A-G Hetero INTERGENIC
SBS Chr1 41225251 C-T Hetero INTRON
SBS Chr2 19375610 A-G Hetero INTERGENIC
SBS Chr2 23636462 C-T Hetero INTRON
SBS Chr2 26330221 G-A Hetero INTERGENIC
SBS Chr2 31230975 C-T Hetero INTERGENIC
SBS Chr3 1952849 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g028000
SBS Chr3 19542917 C-T Hetero INTERGENIC
SBS Chr3 24403781 A-T Hetero INTERGENIC
SBS Chr4 12422272 G-A Homo INTERGENIC
SBS Chr5 509833 C-A Hetero INTERGENIC
SBS Chr6 120031 G-A Hetero INTERGENIC
SBS Chr6 7300245 G-A Homo INTERGENIC
SBS Chr6 18314599 C-T Hetero INTERGENIC
SBS Chr6 24663861 G-A Hetero INTERGENIC
SBS Chr7 1793852 G-A Hetero INTERGENIC
SBS Chr7 13758796 C-A Hetero INTERGENIC
SBS Chr7 15936703 G-A Homo INTERGENIC
SBS Chr7 22586272 A-C Hetero INTRON
SBS Chr7 22590749 C-T Hetero INTRON
SBS Chr7 28177314 A-G Homo INTERGENIC
SBS Chr8 25492881 C-T Hetero INTERGENIC
SBS Chr9 747523 T-C Hetero INTERGENIC
SBS Chr9 4993502 A-T Homo INTERGENIC
SBS Chr10 2379469 A-G Hetero INTERGENIC
SBS Chr10 5431267 C-G Hetero INTERGENIC
SBS Chr11 800336 A-G Hetero INTRON
SBS Chr11 6974923 G-A Hetero INTERGENIC
SBS Chr11 10541503 A-C Hetero INTERGENIC
SBS Chr11 23699922 G-A Hetero INTERGENIC
SBS Chr12 9945547 C-T Hetero INTERGENIC
SBS Chr12 13224146 G-A Homo INTERGENIC
SBS Chr12 18724604 C-T Hetero INTERGENIC
SBS Chr12 18724605 C-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 354263 354265 2
Deletion Chr6 5627174 5627176 2
Deletion Chr3 5701818 5701820 2
Deletion Chr2 8295696 8295703 7
Deletion Chr7 11295185 11295187 2
Deletion Chr12 11570084 11570087 3
Deletion Chr8 12845098 12845099 1
Deletion Chr8 13700168 13700170 2
Deletion Chr3 14591371 14591374 3
Deletion Chr4 14824682 14824701 19
Deletion Chr3 18645002 18645004 2
Deletion Chr3 18676394 18676396 2
Deletion Chr1 21188464 21188466 2
Deletion Chr9 21208902 21208921 19
Deletion Chr7 21337141 21337146 5
Deletion Chr12 21775001 21816000 40999 6
Deletion Chr1 22738981 22738982 1
Deletion Chr4 25992639 25992641 2
Deletion Chr2 28756001 28784000 27999 5
Deletion Chr2 29743001 29814000 70999 6
Deletion Chr4 35685871 35685874 3
Deletion Chr1 39676609 39676611 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3907296 3907299 2
Insertion Chr3 6684510 6684513 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 15024007 15994008 2
Inversion Chr11 15024015 15994014 2
Inversion Chr1 34720892 34988655
Inversion Chr1 34720992 34989452 OsKitaake01g368600

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 9149778 Chr2 29289728 OsKitaake02g294500
Translocation Chr6 9150292 Chr2 29290702 OsKitaake02g294500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9897855	C-T	Hetero	INTRON
SBS	Chr1	22700081	C-T	Hetero	INTERGENIC
SBS	Chr1	32381476	A-G	Hetero	INTERGENIC
SBS	Chr1	41225251	C-T	Hetero	INTRON
SBS	Chr2	19375610	A-G	Hetero	INTERGENIC
SBS	Chr2	23636462	C-T	Hetero	INTRON
SBS	Chr2	26330221	G-A	Hetero	INTERGENIC
SBS	Chr2	31230975	C-T	Hetero	INTERGENIC
SBS	Chr3	1952849	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g028000
SBS	Chr3	19542917	C-T	Hetero	INTERGENIC
SBS	Chr3	24403781	A-T	Hetero	INTERGENIC
SBS	Chr4	12422272	G-A	Homo	INTERGENIC
SBS	Chr5	509833	C-A	Hetero	INTERGENIC
SBS	Chr6	120031	G-A	Hetero	INTERGENIC
SBS	Chr6	7300245	G-A	Homo	INTERGENIC
SBS	Chr6	18314599	C-T	Hetero	INTERGENIC
SBS	Chr6	24663861	G-A	Hetero	INTERGENIC
SBS	Chr7	1793852	G-A	Hetero	INTERGENIC
SBS	Chr7	13758796	C-A	Hetero	INTERGENIC
SBS	Chr7	15936703	G-A	Homo	INTERGENIC
SBS	Chr7	22586272	A-C	Hetero	INTRON
SBS	Chr7	22590749	C-T	Hetero	INTRON
SBS	Chr7	28177314	A-G	Homo	INTERGENIC
SBS	Chr8	25492881	C-T	Hetero	INTERGENIC
SBS	Chr9	747523	T-C	Hetero	INTERGENIC
SBS	Chr9	4993502	A-T	Homo	INTERGENIC
SBS	Chr10	2379469	A-G	Hetero	INTERGENIC
SBS	Chr10	5431267	C-G	Hetero	INTERGENIC
SBS	Chr11	800336	A-G	Hetero	INTRON
SBS	Chr11	6974923	G-A	Hetero	INTERGENIC
SBS	Chr11	10541503	A-C	Hetero	INTERGENIC
SBS	Chr11	23699922	G-A	Hetero	INTERGENIC
SBS	Chr12	9945547	C-T	Hetero	INTERGENIC
SBS	Chr12	13224146	G-A	Homo	INTERGENIC
SBS	Chr12	18724604	C-T	Hetero	INTERGENIC
SBS	Chr12	18724605	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	354263	354265	2
Deletion	Chr6	5627174	5627176	2
Deletion	Chr3	5701818	5701820	2
Deletion	Chr2	8295696	8295703	7
Deletion	Chr7	11295185	11295187	2
Deletion	Chr12	11570084	11570087	3
Deletion	Chr8	12845098	12845099	1
Deletion	Chr8	13700168	13700170	2
Deletion	Chr3	14591371	14591374	3
Deletion	Chr4	14824682	14824701	19
Deletion	Chr3	18645002	18645004	2
Deletion	Chr3	18676394	18676396	2
Deletion	Chr1	21188464	21188466	2
Deletion	Chr9	21208902	21208921	19
Deletion	Chr7	21337141	21337146	5
Deletion	Chr12	21775001	21816000	40999	6
Deletion	Chr1	22738981	22738982	1
Deletion	Chr4	25992639	25992641	2
Deletion	Chr2	28756001	28784000	27999	5
Deletion	Chr2	29743001	29814000	70999	6
Deletion	Chr4	35685871	35685874	3
Deletion	Chr1	39676609	39676611	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	15024007	15994008	2
Inversion	Chr11	15024015	15994014	2
Inversion	Chr1	34720892	34988655
Inversion	Chr1	34720992	34989452	OsKitaake01g368600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes