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Mutant Information

Mutant Name	FN2205-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2205-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18809639 C-T Hetero INTERGENIC
SBS Chr1 36294081 G-A Hetero INTERGENIC
SBS Chr2 291452 T-C Hetero SPLICE_SITE_REGION
SBS Chr2 323649 A-T Hetero INTERGENIC
SBS Chr2 6520504 C-T Hetero INTRON
SBS Chr3 34174486 G-A Homo STOP_GAINED OsKitaake03g369500
SBS Chr4 2493594 G-A Homo INTERGENIC
SBS Chr4 10237104 C-T Homo INTERGENIC
SBS Chr4 16339744 C-T Homo INTERGENIC
SBS Chr4 24549603 G-T Homo INTERGENIC
SBS Chr5 10741876 C-A Homo UTR_5_PRIME
SBS Chr5 15903192 A-G Homo INTERGENIC
SBS Chr5 16862833 T-A Homo UTR_5_PRIME
SBS Chr6 14826153 A-T Homo INTERGENIC
SBS Chr6 19618347 T-C Homo UTR_5_PRIME
SBS Chr6 26610838 C-T Homo INTERGENIC
SBS Chr7 1431860 C-T Hetero INTERGENIC
SBS Chr7 10296495 C-T Hetero INTERGENIC
SBS Chr7 23571603 G-A Homo INTERGENIC
SBS Chr7 25005644 A-G Homo INTRON
SBS Chr8 1565654 T-A Homo INTRON
SBS Chr8 7924635 G-A Hetero INTERGENIC
SBS Chr8 8512583 T-A Hetero INTERGENIC
SBS Chr8 17701825 T-A Hetero INTERGENIC
SBS Chr9 1690282 T-A Hetero INTERGENIC
SBS Chr9 4001072 C-T Homo INTERGENIC
SBS Chr9 6447866 C-A Hetero INTERGENIC
SBS Chr9 7060859 T-C Hetero INTERGENIC
SBS Chr9 9440385 G-C Hetero INTERGENIC
SBS Chr12 10744440 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 657505 657509 4
Deletion Chr8 2834774 2834775 1
Deletion Chr11 5076723 5076733 10 OsKitaake11g064300
Deletion Chr11 6942350 6942355 5
Deletion Chr8 7058431 7058435 4
Deletion Chr8 8462918 8462919 1
Deletion Chr1 9726370 9726382 12
Deletion Chr10 9827121 9827125 4
Deletion Chr2 10934488 10934489 1
Deletion Chr12 14235070 14235077 7
Deletion Chr11 19268801 19268803 2
Deletion Chr6 20217107 20217109 2
Deletion Chr9 22200956 22200965 9
Deletion Chr7 22713574 22713575 1
Deletion Chr4 28642001 28699000 56999 6
Deletion Chr3 32138590 32138601 11
Deletion Chr2 36057816 36057819 3 OsKitaake02g380000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9711938 9711942 3
Insertion Chr3 27018465 27018469 3
Insertion Chr6 2801259 2801262 2
Insertion Chr6 25540577 25540580 2
Insertion Chr10 11785333 11785335 1
Insertion Chr10 12925103 12925105 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1345568 1623032
Inversion Chr7 1345583 1625328 OsKitaake07g022100

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 1623043 Chr5 26388736 OsKitaake05g233200
Translocation Chr7 1625325 Chr4 28698834
Translocation Chr5 26386799 Chr4 28643924 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18809639	C-T	Hetero	INTERGENIC
SBS	Chr1	36294081	G-A	Hetero	INTERGENIC
SBS	Chr2	291452	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr2	323649	A-T	Hetero	INTERGENIC
SBS	Chr2	6520504	C-T	Hetero	INTRON
SBS	Chr3	34174486	G-A	Homo	STOP_GAINED	OsKitaake03g369500
SBS	Chr4	2493594	G-A	Homo	INTERGENIC
SBS	Chr4	10237104	C-T	Homo	INTERGENIC
SBS	Chr4	16339744	C-T	Homo	INTERGENIC
SBS	Chr4	24549603	G-T	Homo	INTERGENIC
SBS	Chr5	10741876	C-A	Homo	UTR_5_PRIME
SBS	Chr5	15903192	A-G	Homo	INTERGENIC
SBS	Chr5	16862833	T-A	Homo	UTR_5_PRIME
SBS	Chr6	14826153	A-T	Homo	INTERGENIC
SBS	Chr6	19618347	T-C	Homo	UTR_5_PRIME
SBS	Chr6	26610838	C-T	Homo	INTERGENIC
SBS	Chr7	1431860	C-T	Hetero	INTERGENIC
SBS	Chr7	10296495	C-T	Hetero	INTERGENIC
SBS	Chr7	23571603	G-A	Homo	INTERGENIC
SBS	Chr7	25005644	A-G	Homo	INTRON
SBS	Chr8	1565654	T-A	Homo	INTRON
SBS	Chr8	7924635	G-A	Hetero	INTERGENIC
SBS	Chr8	8512583	T-A	Hetero	INTERGENIC
SBS	Chr8	17701825	T-A	Hetero	INTERGENIC
SBS	Chr9	1690282	T-A	Hetero	INTERGENIC
SBS	Chr9	4001072	C-T	Homo	INTERGENIC
SBS	Chr9	6447866	C-A	Hetero	INTERGENIC
SBS	Chr9	7060859	T-C	Hetero	INTERGENIC
SBS	Chr9	9440385	G-C	Hetero	INTERGENIC
SBS	Chr12	10744440	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	657505	657509	4
Deletion	Chr8	2834774	2834775	1
Deletion	Chr11	5076723	5076733	10	OsKitaake11g064300
Deletion	Chr11	6942350	6942355	5
Deletion	Chr8	7058431	7058435	4
Deletion	Chr8	8462918	8462919	1
Deletion	Chr1	9726370	9726382	12
Deletion	Chr10	9827121	9827125	4
Deletion	Chr2	10934488	10934489	1
Deletion	Chr12	14235070	14235077	7
Deletion	Chr11	19268801	19268803	2
Deletion	Chr6	20217107	20217109	2
Deletion	Chr9	22200956	22200965	9
Deletion	Chr7	22713574	22713575	1
Deletion	Chr4	28642001	28699000	56999	6
Deletion	Chr3	32138590	32138601	11
Deletion	Chr2	36057816	36057819	3	OsKitaake02g380000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1345568	1623032
Inversion	Chr7	1345583	1625328	OsKitaake07g022100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes