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Mutant Information

Mutant Name	FN2206-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2206-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 15

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 37863671 C-T Homo INTERGENIC
SBS Chr1 38097939 G-A Hetero INTERGENIC
SBS Chr2 11082935 T-A Hetero INTRON
SBS Chr2 14555549 G-A Homo INTERGENIC
SBS Chr2 14555550 C-A Homo INTERGENIC
SBS Chr3 23554620 C-G Homo INTERGENIC
SBS Chr3 29058710 A-T Homo INTERGENIC
SBS Chr4 18821145 T-G Hetero INTERGENIC
SBS Chr6 26734207 G-A Hetero UTR_5_PRIME
SBS Chr7 4809612 C-T Hetero INTRON
SBS Chr8 24229039 G-A Hetero INTERGENIC
SBS Chr10 9462308 C-T Hetero INTERGENIC
SBS Chr10 10666273 G-T Hetero INTERGENIC
SBS Chr10 10666274 A-T Hetero INTERGENIC
SBS Chr11 18344250 C-T Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 60803 60804 1
Deletion Chr4 411873 411874 1
Deletion Chr6 6306720 6306731 11
Deletion Chr2 11402979 11402981 2
Deletion Chr5 22731742 22731743 1
Deletion Chr2 34626735 34626736 1
Deletion Chr1 38946001 38954000 7999 OsKitaake01g417900

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24602667 24602670 2
Insertion Chr11 20095979 20095982 2
Insertion Chr5 9695636 9695638 1 OsKitaake05g088800

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 43041832 43045390 OsKitaake01g474800
Inversion Chr1 43041834 43045390 OsKitaake01g474800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37863671	C-T	Homo	INTERGENIC
SBS	Chr1	38097939	G-A	Hetero	INTERGENIC
SBS	Chr2	11082935	T-A	Hetero	INTRON
SBS	Chr2	14555549	G-A	Homo	INTERGENIC
SBS	Chr2	14555550	C-A	Homo	INTERGENIC
SBS	Chr3	23554620	C-G	Homo	INTERGENIC
SBS	Chr3	29058710	A-T	Homo	INTERGENIC
SBS	Chr4	18821145	T-G	Hetero	INTERGENIC
SBS	Chr6	26734207	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	4809612	C-T	Hetero	INTRON
SBS	Chr8	24229039	G-A	Hetero	INTERGENIC
SBS	Chr10	9462308	C-T	Hetero	INTERGENIC
SBS	Chr10	10666273	G-T	Hetero	INTERGENIC
SBS	Chr10	10666274	A-T	Hetero	INTERGENIC
SBS	Chr11	18344250	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	60803	60804	1
Deletion	Chr4	411873	411874	1
Deletion	Chr6	6306720	6306731	11
Deletion	Chr2	11402979	11402981	2
Deletion	Chr5	22731742	22731743	1
Deletion	Chr2	34626735	34626736	1
Deletion	Chr1	38946001	38954000	7999	OsKitaake01g417900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	43041832	43045390	OsKitaake01g474800
Inversion	Chr1	43041834	43045390	OsKitaake01g474800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes