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Mutant Information

Mutant Name	FN2207-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2207-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1788795 G-A Homo INTERGENIC
SBS Chr1 3482723 G-A Homo INTERGENIC
SBS Chr1 8069681 G-A Hetero INTERGENIC
SBS Chr1 10387859 T-C Hetero UTR_3_PRIME
SBS Chr1 25806022 A-T Hetero INTERGENIC
SBS Chr1 25905406 A-T Hetero INTERGENIC
SBS Chr1 42333441 G-A Hetero INTERGENIC
SBS Chr2 4472510 G-A Homo INTERGENIC
SBS Chr2 5413330 T-A Homo INTRON
SBS Chr2 30370438 T-G Homo INTERGENIC
SBS Chr2 32243694 A-C Hetero INTRON
SBS Chr2 34155967 C-G Homo INTERGENIC
SBS Chr3 1613606 T-C Hetero INTERGENIC
SBS Chr3 1613607 T-A Hetero INTERGENIC
SBS Chr3 15764465 A-T Hetero INTERGENIC
SBS Chr3 36263291 T-G Hetero UTR_3_PRIME
SBS Chr4 6148869 A-T Hetero INTERGENIC
SBS Chr4 17012953 T-G Hetero INTERGENIC
SBS Chr4 19453730 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g099700
SBS Chr4 22251775 A-G Hetero INTERGENIC
SBS Chr5 668983 T-C Homo INTRON
SBS Chr5 4793060 G-T Hetero INTERGENIC
SBS Chr5 8290387 C-T Hetero INTERGENIC
SBS Chr5 8290388 G-T Hetero INTERGENIC
SBS Chr5 8290389 A-G Hetero INTERGENIC
SBS Chr5 11140381 G-A Hetero INTERGENIC
SBS Chr5 13659179 C-T Hetero INTERGENIC
SBS Chr5 15677800 T-A Homo INTERGENIC
SBS Chr5 16203456 A-T Hetero UTR_3_PRIME
SBS Chr5 21119274 A-G Hetero INTERGENIC
SBS Chr6 7840020 A-G Hetero INTERGENIC
SBS Chr6 16797987 C-T Homo INTRON
SBS Chr6 28687126 A-G Homo INTRON
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 155002 C-T Hetero INTERGENIC
SBS Chr7 155005 C-T Hetero INTERGENIC
SBS Chr7 982628 A-T Hetero INTERGENIC
SBS Chr7 7154361 C-T Hetero INTERGENIC
SBS Chr7 7740803 G-A Homo INTRON
SBS Chr7 9193710 T-A Hetero INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 1028242 T-A Hetero INTERGENIC
SBS Chr8 4379706 G-A Hetero INTERGENIC
SBS Chr9 11285176 C-T Hetero INTERGENIC
SBS Chr10 5062812 T-C Hetero INTERGENIC
SBS Chr10 7346852 T-C Hetero INTERGENIC
SBS Chr10 15203405 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g096700
SBS Chr10 15393427 G-C Homo INTRON
SBS Chr11 23594057 G-A Hetero INTERGENIC
SBS Chr12 2319929 G-C Hetero INTRON
SBS Chr12 9839322 G-A Homo INTERGENIC
SBS Chr12 16845384 C-T Homo INTERGENIC
SBS Chr12 25839414 G-A Hetero INTERGENIC

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1395001 1411000 15999
Deletion Chr2 7776008 7776012 4
Deletion Chr1 13684134 13684135 1
Deletion Chr6 20883290 20883297 7

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2826600 2826603 2
Insertion Chr1 15278059 15278062 2
Insertion Chr2 6852886 6852893 6
Insertion Chr5 26017788 26017791 2
Insertion Chr7 26091602 26091605 2
Insertion Chr8 9393884 9393888 3
Insertion Chr9 17379605 17379611 5
Insertion Chr11 23329670 23329673 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 19798515 20170302

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 15777223 Chr6 6447414

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1788795	G-A	Homo	INTERGENIC
SBS	Chr1	3482723	G-A	Homo	INTERGENIC
SBS	Chr1	8069681	G-A	Hetero	INTERGENIC
SBS	Chr1	10387859	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	25806022	A-T	Hetero	INTERGENIC
SBS	Chr1	25905406	A-T	Hetero	INTERGENIC
SBS	Chr1	42333441	G-A	Hetero	INTERGENIC
SBS	Chr2	4472510	G-A	Homo	INTERGENIC
SBS	Chr2	5413330	T-A	Homo	INTRON
SBS	Chr2	30370438	T-G	Homo	INTERGENIC
SBS	Chr2	32243694	A-C	Hetero	INTRON
SBS	Chr2	34155967	C-G	Homo	INTERGENIC
SBS	Chr3	1613606	T-C	Hetero	INTERGENIC
SBS	Chr3	1613607	T-A	Hetero	INTERGENIC
SBS	Chr3	15764465	A-T	Hetero	INTERGENIC
SBS	Chr3	36263291	T-G	Hetero	UTR_3_PRIME
SBS	Chr4	6148869	A-T	Hetero	INTERGENIC
SBS	Chr4	17012953	T-G	Hetero	INTERGENIC
SBS	Chr4	19453730	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g099700
SBS	Chr4	22251775	A-G	Hetero	INTERGENIC
SBS	Chr5	668983	T-C	Homo	INTRON
SBS	Chr5	4793060	G-T	Hetero	INTERGENIC
SBS	Chr5	8290387	C-T	Hetero	INTERGENIC
SBS	Chr5	8290388	G-T	Hetero	INTERGENIC
SBS	Chr5	8290389	A-G	Hetero	INTERGENIC
SBS	Chr5	11140381	G-A	Hetero	INTERGENIC
SBS	Chr5	13659179	C-T	Hetero	INTERGENIC
SBS	Chr5	15677800	T-A	Homo	INTERGENIC
SBS	Chr5	16203456	A-T	Hetero	UTR_3_PRIME
SBS	Chr5	21119274	A-G	Hetero	INTERGENIC
SBS	Chr6	7840020	A-G	Hetero	INTERGENIC
SBS	Chr6	16797987	C-T	Homo	INTRON
SBS	Chr6	28687126	A-G	Homo	INTRON
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	155002	C-T	Hetero	INTERGENIC
SBS	Chr7	155005	C-T	Hetero	INTERGENIC
SBS	Chr7	982628	A-T	Hetero	INTERGENIC
SBS	Chr7	7154361	C-T	Hetero	INTERGENIC
SBS	Chr7	7740803	G-A	Homo	INTRON
SBS	Chr7	9193710	T-A	Hetero	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	1028242	T-A	Hetero	INTERGENIC
SBS	Chr8	4379706	G-A	Hetero	INTERGENIC
SBS	Chr9	11285176	C-T	Hetero	INTERGENIC
SBS	Chr10	5062812	T-C	Hetero	INTERGENIC
SBS	Chr10	7346852	T-C	Hetero	INTERGENIC
SBS	Chr10	15203405	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g096700
SBS	Chr10	15393427	G-C	Homo	INTRON
SBS	Chr11	23594057	G-A	Hetero	INTERGENIC
SBS	Chr12	2319929	G-C	Hetero	INTRON
SBS	Chr12	9839322	G-A	Homo	INTERGENIC
SBS	Chr12	16845384	C-T	Homo	INTERGENIC
SBS	Chr12	25839414	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1395001	1411000	15999
Deletion	Chr2	7776008	7776012	4
Deletion	Chr1	13684134	13684135	1
Deletion	Chr6	20883290	20883297	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	19798515	20170302

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes