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Mutant Information

Mutant Name	FN2210-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2210-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1132716 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 26831628 T-G Homo SYNONYMOUS_CODING
SBS Chr1 28901557 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 36969162 C-T Hetero INTERGENIC
SBS Chr1 41397567 C-T Hetero INTRON
SBS Chr2 1263987 G-T Hetero INTERGENIC
SBS Chr2 1263989 C-T Hetero INTERGENIC
SBS Chr2 9005858 T-C Hetero INTERGENIC
SBS Chr2 10258992 A-T Hetero INTERGENIC
SBS Chr2 16643254 T-C Hetero INTRON
SBS Chr2 19276011 C-T Hetero INTERGENIC
SBS Chr2 23724615 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g233100
SBS Chr2 28687225 T-C Homo INTRON
SBS Chr3 10640805 C-T Hetero INTERGENIC
SBS Chr3 11413207 T-C Hetero INTRON
SBS Chr3 35190014 G-A Hetero INTERGENIC
SBS Chr4 6629759 A-G Hetero INTERGENIC
SBS Chr4 22677332 G-A Hetero INTERGENIC
SBS Chr4 23032971 C-T Hetero INTRON
SBS Chr4 33305833 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g272600
SBS Chr4 35767894 T-C Hetero INTERGENIC
SBS Chr5 22600006 G-A Hetero INTERGENIC
SBS Chr5 22600007 G-A Hetero INTERGENIC
SBS Chr5 27565325 G-A Hetero INTERGENIC
SBS Chr6 3633622 G-A Hetero INTERGENIC
SBS Chr6 7544194 G-A Hetero INTERGENIC
SBS Chr7 22626020 G-A Hetero INTERGENIC
SBS Chr7 23382556 A-T Hetero INTERGENIC
SBS Chr7 25389566 G-A Hetero INTERGENIC
SBS Chr8 11297667 T-A Hetero INTERGENIC
SBS Chr8 13434115 A-G Hetero INTERGENIC
SBS Chr8 16728255 G-A Hetero INTRON
SBS Chr8 19433138 G-A Hetero INTERGENIC
SBS Chr8 27997883 G-T Homo INTERGENIC
SBS Chr9 8525982 A-T Hetero INTERGENIC
SBS Chr9 8703299 T-C Hetero INTERGENIC
SBS Chr10 4112086 G-A Homo INTERGENIC
SBS Chr10 19694862 C-A Homo INTERGENIC
SBS Chr10 23140417 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g195250
SBS Chr11 3128757 G-T Homo INTERGENIC
SBS Chr11 3128759 C-T Homo INTERGENIC
SBS Chr11 23838047 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g191100
SBS Chr11 29386867 C-T Hetero INTERGENIC
SBS Chr12 21465438 T-G Hetero INTERGENIC
SBS Chr12 23115329 C-G Hetero INTRON

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1102002 1102011 9
Deletion Chr2 13825345 13825655 310
Deletion Chr12 16495750 16495752 2
Deletion Chr5 28834648 28834649 1
Deletion Chr11 29614001 29739000 124999 15
Deletion Chr1 34819263 34819265 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13020214 13020217 2 OsKitaake02g145100
Insertion Chr4 22816492 22816495 2
Insertion Chr6 1164770 1164774 3
Insertion Chr7 11010598 11010601 2
Insertion Chr11 25181240 25181242 1
Insertion Chr1 9692959 9692961 1
Insertion Chr8 2510172 2510174 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7496831 8393979
Inversion Chr12 7496871 8394013

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 19562500 Chr2 11177119
Translocation Chr12 26952589 Chr11 29611827 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1132716	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	26831628	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	28901557	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	36969162	C-T	Hetero	INTERGENIC
SBS	Chr1	41397567	C-T	Hetero	INTRON
SBS	Chr2	1263987	G-T	Hetero	INTERGENIC
SBS	Chr2	1263989	C-T	Hetero	INTERGENIC
SBS	Chr2	9005858	T-C	Hetero	INTERGENIC
SBS	Chr2	10258992	A-T	Hetero	INTERGENIC
SBS	Chr2	16643254	T-C	Hetero	INTRON
SBS	Chr2	19276011	C-T	Hetero	INTERGENIC
SBS	Chr2	23724615	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g233100
SBS	Chr2	28687225	T-C	Homo	INTRON
SBS	Chr3	10640805	C-T	Hetero	INTERGENIC
SBS	Chr3	11413207	T-C	Hetero	INTRON
SBS	Chr3	35190014	G-A	Hetero	INTERGENIC
SBS	Chr4	6629759	A-G	Hetero	INTERGENIC
SBS	Chr4	22677332	G-A	Hetero	INTERGENIC
SBS	Chr4	23032971	C-T	Hetero	INTRON
SBS	Chr4	33305833	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g272600
SBS	Chr4	35767894	T-C	Hetero	INTERGENIC
SBS	Chr5	22600006	G-A	Hetero	INTERGENIC
SBS	Chr5	22600007	G-A	Hetero	INTERGENIC
SBS	Chr5	27565325	G-A	Hetero	INTERGENIC
SBS	Chr6	3633622	G-A	Hetero	INTERGENIC
SBS	Chr6	7544194	G-A	Hetero	INTERGENIC
SBS	Chr7	22626020	G-A	Hetero	INTERGENIC
SBS	Chr7	23382556	A-T	Hetero	INTERGENIC
SBS	Chr7	25389566	G-A	Hetero	INTERGENIC
SBS	Chr8	11297667	T-A	Hetero	INTERGENIC
SBS	Chr8	13434115	A-G	Hetero	INTERGENIC
SBS	Chr8	16728255	G-A	Hetero	INTRON
SBS	Chr8	19433138	G-A	Hetero	INTERGENIC
SBS	Chr8	27997883	G-T	Homo	INTERGENIC
SBS	Chr9	8525982	A-T	Hetero	INTERGENIC
SBS	Chr9	8703299	T-C	Hetero	INTERGENIC
SBS	Chr10	4112086	G-A	Homo	INTERGENIC
SBS	Chr10	19694862	C-A	Homo	INTERGENIC
SBS	Chr10	23140417	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g195250
SBS	Chr11	3128757	G-T	Homo	INTERGENIC
SBS	Chr11	3128759	C-T	Homo	INTERGENIC
SBS	Chr11	23838047	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g191100
SBS	Chr11	29386867	C-T	Hetero	INTERGENIC
SBS	Chr12	21465438	T-G	Hetero	INTERGENIC
SBS	Chr12	23115329	C-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1102002	1102011	9
Deletion	Chr2	13825345	13825655	310
Deletion	Chr12	16495750	16495752	2
Deletion	Chr5	28834648	28834649	1
Deletion	Chr11	29614001	29739000	124999	15
Deletion	Chr1	34819263	34819265	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7496831	8393979
Inversion	Chr12	7496871	8394013

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes