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Mutant Information

Mutant Name	FN2211-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2211-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14386461 A-G Hetero INTERGENIC
SBS Chr1 15352309 C-G Homo INTERGENIC
SBS Chr2 15781360 C-T Hetero UTR_3_PRIME
SBS Chr2 27912431 G-A Hetero INTERGENIC
SBS Chr2 33261092 A-G Hetero INTRON
SBS Chr3 4943434 A-T Hetero INTRON
SBS Chr3 17478722 A-T Hetero INTERGENIC
SBS Chr3 31484747 T-A Hetero INTRON
SBS Chr4 6241340 T-C Hetero INTERGENIC
SBS Chr5 7236516 T-A Hetero INTERGENIC
SBS Chr5 10300023 T-C Hetero INTERGENIC
SBS Chr6 4071781 T-A Homo INTERGENIC
SBS Chr6 6026739 C-T Homo INTRON
SBS Chr6 6875286 A-G Hetero INTERGENIC
SBS Chr6 7895355 T-C Hetero INTERGENIC
SBS Chr7 1056577 A-G Hetero INTERGENIC
SBS Chr7 4818767 G-A Homo UTR_3_PRIME
SBS Chr7 5561486 T-G Hetero INTERGENIC
SBS Chr7 14013291 T-C Hetero INTERGENIC
SBS Chr8 1616934 T-C Hetero INTERGENIC
SBS Chr8 11492368 C-T Hetero INTERGENIC
SBS Chr8 29036256 G-A Hetero INTERGENIC
SBS Chr9 1922674 T-G Homo INTERGENIC
SBS Chr10 12238616 C-T Hetero INTERGENIC
SBS Chr11 9561125 G-A Hetero INTRON
SBS Chr11 16230898 G-C Hetero INTERGENIC
SBS Chr11 20384005 C-T Homo INTERGENIC
SBS Chr11 20384006 G-T Homo INTERGENIC
SBS Chr11 26328430 C-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 10931073 10931075 2
Deletion Chr3 13052846 13052849 3
Deletion Chr12 13295606 13295609 3 OsKitaake12g110600
Deletion Chr6 14611001 14664000 52999 4
Deletion Chr11 15119001 15141000 21999
Deletion Chr10 15760803 15760811 8
Deletion Chr7 16178816 16178825 9
Deletion Chr7 20933699 20933700 1 OsKitaake07g172700
Deletion Chr1 35234813 35234823 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 24444534 24444537 2
Insertion Chr4 23537101 23537105 3
Insertion Chr9 9445784 9445791 6
Insertion Chr12 1093514 1093517 2
Insertion Chr12 20038996 20038999 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 15666995 16002909 OsKitaake10g105900
Inversion Chr10 15666998 15863321 OsKitaake10g103500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 132389 Chr2 36369613
Translocation Chr11 15120953 Chr8 132399

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14386461	A-G	Hetero	INTERGENIC
SBS	Chr1	15352309	C-G	Homo	INTERGENIC
SBS	Chr2	15781360	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	27912431	G-A	Hetero	INTERGENIC
SBS	Chr2	33261092	A-G	Hetero	INTRON
SBS	Chr3	4943434	A-T	Hetero	INTRON
SBS	Chr3	17478722	A-T	Hetero	INTERGENIC
SBS	Chr3	31484747	T-A	Hetero	INTRON
SBS	Chr4	6241340	T-C	Hetero	INTERGENIC
SBS	Chr5	7236516	T-A	Hetero	INTERGENIC
SBS	Chr5	10300023	T-C	Hetero	INTERGENIC
SBS	Chr6	4071781	T-A	Homo	INTERGENIC
SBS	Chr6	6026739	C-T	Homo	INTRON
SBS	Chr6	6875286	A-G	Hetero	INTERGENIC
SBS	Chr6	7895355	T-C	Hetero	INTERGENIC
SBS	Chr7	1056577	A-G	Hetero	INTERGENIC
SBS	Chr7	4818767	G-A	Homo	UTR_3_PRIME
SBS	Chr7	5561486	T-G	Hetero	INTERGENIC
SBS	Chr7	14013291	T-C	Hetero	INTERGENIC
SBS	Chr8	1616934	T-C	Hetero	INTERGENIC
SBS	Chr8	11492368	C-T	Hetero	INTERGENIC
SBS	Chr8	29036256	G-A	Hetero	INTERGENIC
SBS	Chr9	1922674	T-G	Homo	INTERGENIC
SBS	Chr10	12238616	C-T	Hetero	INTERGENIC
SBS	Chr11	9561125	G-A	Hetero	INTRON
SBS	Chr11	16230898	G-C	Hetero	INTERGENIC
SBS	Chr11	20384005	C-T	Homo	INTERGENIC
SBS	Chr11	20384006	G-T	Homo	INTERGENIC
SBS	Chr11	26328430	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	10931073	10931075	2
Deletion	Chr3	13052846	13052849	3
Deletion	Chr12	13295606	13295609	3	OsKitaake12g110600
Deletion	Chr6	14611001	14664000	52999	4
Deletion	Chr11	15119001	15141000	21999
Deletion	Chr10	15760803	15760811	8
Deletion	Chr7	16178816	16178825	9
Deletion	Chr7	20933699	20933700	1	OsKitaake07g172700
Deletion	Chr1	35234813	35234823	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	15666995	16002909	OsKitaake10g105900
Inversion	Chr10	15666998	15863321	OsKitaake10g103500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes