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Mutant Information

Mutant Name	FN2212-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2212-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7761075 T-A Hetero INTERGENIC
SBS Chr1 8713636 A-G Hetero INTERGENIC
SBS Chr1 14262458 C-T Hetero INTERGENIC
SBS Chr1 15969417 A-C Hetero INTRON
SBS Chr1 23321929 G-T Homo INTRON
SBS Chr1 34096006 G-A Homo INTERGENIC
SBS Chr1 41207315 C-T Homo INTERGENIC
SBS Chr2 13802870 A-C Hetero INTERGENIC
SBS Chr2 13843554 C-A Homo INTERGENIC
SBS Chr2 21016590 T-G Homo INTERGENIC
SBS Chr3 8539275 C-T Hetero INTERGENIC
SBS Chr3 11769502 T-G Hetero INTERGENIC
SBS Chr4 3499793 A-C Homo INTRON
SBS Chr4 16674568 T-G Homo INTRON
SBS Chr4 23196346 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 24201463 G-A Hetero INTERGENIC
SBS Chr4 36156273 T-A Homo INTERGENIC
SBS Chr4 36841947 C-T Hetero INTERGENIC
SBS Chr4 36891124 A-G Homo INTERGENIC
SBS Chr5 3876113 C-T Hetero INTERGENIC
SBS Chr6 7229366 G-A Hetero INTERGENIC
SBS Chr6 15932959 C-T Hetero INTERGENIC
SBS Chr6 25287302 G-A Hetero INTERGENIC
SBS Chr7 141290 C-A Hetero INTERGENIC
SBS Chr7 17997054 T-G Hetero INTERGENIC
SBS Chr8 13119122 T-G Hetero INTERGENIC
SBS Chr8 15975097 A-G Hetero UTR_5_PRIME
SBS Chr8 17163924 A-G Hetero INTERGENIC
SBS Chr9 11661102 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g074500
SBS Chr9 17561710 C-T Hetero INTERGENIC
SBS Chr10 7971385 T-C Homo INTERGENIC
SBS Chr10 11548351 C-A Homo INTERGENIC
SBS Chr10 18760018 T-A Hetero INTRON
SBS Chr11 15251315 G-A Hetero INTERGENIC
SBS Chr11 19342685 C-G Hetero INTERGENIC
SBS Chr11 20000704 A-G Homo INTERGENIC
SBS Chr12 15022131 G-C Hetero INTERGENIC
SBS Chr12 15096714 T-C Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1444246 1444248 2
Deletion Chr11 2038278 2038280 2
Deletion Chr5 5893760 5893848 88
Deletion Chr12 6620343 6620345 2
Deletion Chr3 7172269 7172272 3 OsKitaake03g100000
Deletion Chr6 8524001 8638000 113999 4
Deletion Chr6 8645001 8924000 278999 8
Deletion Chr10 8669078 8669739 661
Deletion Chr1 9294294 9294305 11
Deletion Chr8 12245013 12245015 2
Deletion Chr1 13126001 13153000 26999 OsKitaake01g155500
Deletion Chr12 13338331 13338336 5
Deletion Chr1 13842083 13842096 13
Deletion Chr5 13967327 13967330 3
Deletion Chr11 18129818 18129820 2
Deletion Chr2 19382073 19382077 4
Deletion Chr10 20601319 20601321 2
Deletion Chr12 24584127 24584136 9
Deletion Chr11 26001764 26001765 1
Deletion Chr4 26892870 26892872 2
Deletion Chr8 28470606 28470618 12
Deletion Chr2 29986466 29986470 4 OsKitaake02g304300
Deletion Chr4 35406764 35406765 1 OsKitaake04g300100

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38376490 38376492 1
Insertion Chr1 43839163 43839166 2
Insertion Chr3 14982278 14982281 2
Insertion Chr8 14204646 14204648 1
Insertion Chr9 14860235 14860238 2
Insertion Chr11 17620896 17620899 2
Insertion Chr12 19123522 19123525 2
Insertion Chr7 11991294 11991296 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 8740666 8828365 2
Inversion Chr10 18978339 19065502 OsKitaake10g136900
Inversion Chr10 18978345 19065516 OsKitaake10g136900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 8923902 Chr2 18934219 OsKitaake02g185700
Translocation Chr6 8925590 Chr2 18934229 OsKitaake02g185700
Translocation Chr7 23385666 Chr1 40587186 OsKitaake01g440800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7761075	T-A	Hetero	INTERGENIC
SBS	Chr1	8713636	A-G	Hetero	INTERGENIC
SBS	Chr1	14262458	C-T	Hetero	INTERGENIC
SBS	Chr1	15969417	A-C	Hetero	INTRON
SBS	Chr1	23321929	G-T	Homo	INTRON
SBS	Chr1	34096006	G-A	Homo	INTERGENIC
SBS	Chr1	41207315	C-T	Homo	INTERGENIC
SBS	Chr2	13802870	A-C	Hetero	INTERGENIC
SBS	Chr2	13843554	C-A	Homo	INTERGENIC
SBS	Chr2	21016590	T-G	Homo	INTERGENIC
SBS	Chr3	8539275	C-T	Hetero	INTERGENIC
SBS	Chr3	11769502	T-G	Hetero	INTERGENIC
SBS	Chr4	3499793	A-C	Homo	INTRON
SBS	Chr4	16674568	T-G	Homo	INTRON
SBS	Chr4	23196346	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	24201463	G-A	Hetero	INTERGENIC
SBS	Chr4	36156273	T-A	Homo	INTERGENIC
SBS	Chr4	36841947	C-T	Hetero	INTERGENIC
SBS	Chr4	36891124	A-G	Homo	INTERGENIC
SBS	Chr5	3876113	C-T	Hetero	INTERGENIC
SBS	Chr6	7229366	G-A	Hetero	INTERGENIC
SBS	Chr6	15932959	C-T	Hetero	INTERGENIC
SBS	Chr6	25287302	G-A	Hetero	INTERGENIC
SBS	Chr7	141290	C-A	Hetero	INTERGENIC
SBS	Chr7	17997054	T-G	Hetero	INTERGENIC
SBS	Chr8	13119122	T-G	Hetero	INTERGENIC
SBS	Chr8	15975097	A-G	Hetero	UTR_5_PRIME
SBS	Chr8	17163924	A-G	Hetero	INTERGENIC
SBS	Chr9	11661102	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g074500
SBS	Chr9	17561710	C-T	Hetero	INTERGENIC
SBS	Chr10	7971385	T-C	Homo	INTERGENIC
SBS	Chr10	11548351	C-A	Homo	INTERGENIC
SBS	Chr10	18760018	T-A	Hetero	INTRON
SBS	Chr11	15251315	G-A	Hetero	INTERGENIC
SBS	Chr11	19342685	C-G	Hetero	INTERGENIC
SBS	Chr11	20000704	A-G	Homo	INTERGENIC
SBS	Chr12	15022131	G-C	Hetero	INTERGENIC
SBS	Chr12	15096714	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1444246	1444248	2
Deletion	Chr11	2038278	2038280	2
Deletion	Chr5	5893760	5893848	88
Deletion	Chr12	6620343	6620345	2
Deletion	Chr3	7172269	7172272	3	OsKitaake03g100000
Deletion	Chr6	8524001	8638000	113999	4
Deletion	Chr6	8645001	8924000	278999	8
Deletion	Chr10	8669078	8669739	661
Deletion	Chr1	9294294	9294305	11
Deletion	Chr8	12245013	12245015	2
Deletion	Chr1	13126001	13153000	26999	OsKitaake01g155500
Deletion	Chr12	13338331	13338336	5
Deletion	Chr1	13842083	13842096	13
Deletion	Chr5	13967327	13967330	3
Deletion	Chr11	18129818	18129820	2
Deletion	Chr2	19382073	19382077	4
Deletion	Chr10	20601319	20601321	2
Deletion	Chr12	24584127	24584136	9
Deletion	Chr11	26001764	26001765	1
Deletion	Chr4	26892870	26892872	2
Deletion	Chr8	28470606	28470618	12
Deletion	Chr2	29986466	29986470	4	OsKitaake02g304300
Deletion	Chr4	35406764	35406765	1	OsKitaake04g300100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	8740666	8828365	2
Inversion	Chr10	18978339	19065502	OsKitaake10g136900
Inversion	Chr10	18978345	19065516	OsKitaake10g136900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes