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Mutant Information

Mutant Name	FN2213-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2213-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15882388 A-G Homo INTERGENIC
SBS Chr1 35780184 C-G Homo NON_SYNONYMOUS_CODING OsKitaake01g379000
SBS Chr1 37981572 C-T Hetero INTERGENIC
SBS Chr1 38289044 A-C Homo INTERGENIC
SBS Chr1 42022752 A-G Hetero INTRON
SBS Chr2 4287264 T-G Hetero INTERGENIC
SBS Chr2 30846428 T-C Hetero INTERGENIC
SBS Chr4 2193121 A-G Hetero INTERGENIC
SBS Chr4 6999703 C-T Homo INTERGENIC
SBS Chr5 976599 T-C Hetero INTERGENIC
SBS Chr5 17191980 A-C Hetero INTERGENIC
SBS Chr5 21843148 C-A Hetero INTERGENIC
SBS Chr6 6278927 A-T Hetero INTERGENIC
SBS Chr6 7857305 A-T Homo INTERGENIC
SBS Chr6 11206101 C-T Homo INTERGENIC
SBS Chr6 29761446 C-T Hetero INTERGENIC
SBS Chr7 6322776 A-T Homo INTERGENIC
SBS Chr7 7456174 C-A Hetero INTERGENIC
SBS Chr7 13226271 C-T Hetero INTERGENIC
SBS Chr7 15716788 T-C Hetero INTERGENIC
SBS Chr7 15860119 T-A Hetero INTERGENIC
SBS Chr7 27205268 A-G Hetero INTERGENIC
SBS Chr8 17297681 G-A Hetero INTERGENIC
SBS Chr9 2148480 C-T Hetero INTERGENIC
SBS Chr9 4202190 G-T Hetero INTERGENIC
SBS Chr9 10272615 C-T Hetero INTRON
SBS Chr9 18370720 T-C Hetero INTERGENIC
SBS Chr10 1349668 G-A Hetero INTERGENIC
SBS Chr10 22675118 T-A Hetero INTERGENIC
SBS Chr11 13430074 G-A Hetero INTERGENIC
SBS Chr12 3279485 C-T Homo INTRON
SBS Chr12 3279489 G-T Homo INTRON
SBS Chr12 13856095 C-G Hetero INTERGENIC
SBS Chr12 14476525 A-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 781780 781788 8
Deletion Chr5 2786213 2786216 3 OsKitaake05g031800
Deletion Chr6 2788376 2788382 6
Deletion Chr2 4301835 4301838 3
Deletion Chr4 5174431 5174437 6
Deletion Chr6 7912533 7912534 1
Deletion Chr1 8937214 8937216 2
Deletion Chr3 15015001 15052000 36999 OsKitaake03g195100
Deletion Chr12 17104227 17104228 1
Deletion Chr3 26819840 26819845 5
Deletion Chr5 29415728 29415730 2
Deletion Chr1 30267739 30267764 25
Deletion Chr3 30847068 30847075 7
Deletion Chr3 33439924 33439930 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17450171 17450173 1
Insertion Chr6 6723104 6723106 1
Insertion Chr6 27715261 27715266 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 11461534 11466204 2
Inversion Chr3 14918249 15017040 OsKitaake03g195100
Inversion Chr1 30592404 30975542
Inversion Chr1 30592429 30738798

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10028590 Chr3 15049734
Translocation Chr9 10028618 Chr3 15017053 OsKitaake03g195100
Translocation Chr9 11466217 Chr2 23620253 2
Translocation Chr9 11497000 Chr2 17949686 OsKitaake09g071700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15882388	A-G	Homo	INTERGENIC
SBS	Chr1	35780184	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g379000
SBS	Chr1	37981572	C-T	Hetero	INTERGENIC
SBS	Chr1	38289044	A-C	Homo	INTERGENIC
SBS	Chr1	42022752	A-G	Hetero	INTRON
SBS	Chr2	4287264	T-G	Hetero	INTERGENIC
SBS	Chr2	30846428	T-C	Hetero	INTERGENIC
SBS	Chr4	2193121	A-G	Hetero	INTERGENIC
SBS	Chr4	6999703	C-T	Homo	INTERGENIC
SBS	Chr5	976599	T-C	Hetero	INTERGENIC
SBS	Chr5	17191980	A-C	Hetero	INTERGENIC
SBS	Chr5	21843148	C-A	Hetero	INTERGENIC
SBS	Chr6	6278927	A-T	Hetero	INTERGENIC
SBS	Chr6	7857305	A-T	Homo	INTERGENIC
SBS	Chr6	11206101	C-T	Homo	INTERGENIC
SBS	Chr6	29761446	C-T	Hetero	INTERGENIC
SBS	Chr7	6322776	A-T	Homo	INTERGENIC
SBS	Chr7	7456174	C-A	Hetero	INTERGENIC
SBS	Chr7	13226271	C-T	Hetero	INTERGENIC
SBS	Chr7	15716788	T-C	Hetero	INTERGENIC
SBS	Chr7	15860119	T-A	Hetero	INTERGENIC
SBS	Chr7	27205268	A-G	Hetero	INTERGENIC
SBS	Chr8	17297681	G-A	Hetero	INTERGENIC
SBS	Chr9	2148480	C-T	Hetero	INTERGENIC
SBS	Chr9	4202190	G-T	Hetero	INTERGENIC
SBS	Chr9	10272615	C-T	Hetero	INTRON
SBS	Chr9	18370720	T-C	Hetero	INTERGENIC
SBS	Chr10	1349668	G-A	Hetero	INTERGENIC
SBS	Chr10	22675118	T-A	Hetero	INTERGENIC
SBS	Chr11	13430074	G-A	Hetero	INTERGENIC
SBS	Chr12	3279485	C-T	Homo	INTRON
SBS	Chr12	3279489	G-T	Homo	INTRON
SBS	Chr12	13856095	C-G	Hetero	INTERGENIC
SBS	Chr12	14476525	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	781780	781788	8
Deletion	Chr5	2786213	2786216	3	OsKitaake05g031800
Deletion	Chr6	2788376	2788382	6
Deletion	Chr2	4301835	4301838	3
Deletion	Chr4	5174431	5174437	6
Deletion	Chr6	7912533	7912534	1
Deletion	Chr1	8937214	8937216	2
Deletion	Chr3	15015001	15052000	36999	OsKitaake03g195100
Deletion	Chr12	17104227	17104228	1
Deletion	Chr3	26819840	26819845	5
Deletion	Chr5	29415728	29415730	2
Deletion	Chr1	30267739	30267764	25
Deletion	Chr3	30847068	30847075	7
Deletion	Chr3	33439924	33439930	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11461534	11466204	2
Inversion	Chr3	14918249	15017040	OsKitaake03g195100
Inversion	Chr1	30592404	30975542
Inversion	Chr1	30592429	30738798

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes