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Mutant Information

Mutant Name	FN2216-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2216-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 37839 C-T Hetero INTERGENIC
SBS Chr1 5342411 C-T Homo UTR_5_PRIME
SBS Chr1 27047300 T-C Hetero INTERGENIC
SBS Chr2 1854527 G-A Hetero INTERGENIC
SBS Chr2 8299148 T-A Hetero INTRON
SBS Chr2 24905766 G-A Homo INTERGENIC
SBS Chr2 28292783 T-C Hetero INTERGENIC
SBS Chr3 2177034 C-G Hetero INTERGENIC
SBS Chr3 11281155 G-T Hetero INTERGENIC
SBS Chr3 14151722 G-A Hetero INTERGENIC
SBS Chr3 33720917 G-C Hetero INTERGENIC
SBS Chr4 11418889 C-T Hetero INTERGENIC
SBS Chr5 7762874 C-T Hetero INTERGENIC
SBS Chr5 10586410 A-G Hetero INTRON
SBS Chr5 19533044 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g153900
SBS Chr5 20731110 T-G Hetero INTERGENIC
SBS Chr5 21395308 G-C Hetero INTERGENIC
SBS Chr6 182362 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g000700
SBS Chr6 182370 C-T Hetero STOP_GAINED OsKitaake06g000700
SBS Chr6 15100909 G-A Hetero INTERGENIC
SBS Chr7 4947187 A-G Homo INTERGENIC
SBS Chr7 9605891 G-A Hetero INTERGENIC
SBS Chr7 10360163 C-A Hetero INTRON
SBS Chr7 11583083 T-C Hetero INTERGENIC
SBS Chr7 23722023 A-G Hetero INTERGENIC
SBS Chr8 21194497 G-T Hetero UTR_3_PRIME
SBS Chr8 24084208 G-A Homo INTRON
SBS Chr8 25734935 G-A Hetero INTERGENIC
SBS Chr10 4060918 G-A Hetero INTERGENIC
SBS Chr10 5706383 G-A Hetero INTERGENIC
SBS Chr10 10379913 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g060300
SBS Chr12 250674 G-A Hetero INTERGENIC
SBS Chr12 13530399 G-A Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1896447 1896452 5
Deletion Chr6 3335312 3335314 2
Deletion Chr12 4761367 4761369 2
Deletion Chr1 5783610 5783613 3
Deletion Chr4 6379900 6379902 2
Deletion Chr1 6502819 6502825 6
Deletion Chr11 8282181 8282186 5
Deletion Chr6 8864128 8864136 8
Deletion Chr12 11322464 11322465 1
Deletion Chr11 11355588 11355601 13
Deletion Chr6 12069051 12069055 4
Deletion Chr11 16996339 16996349 10
Deletion Chr1 18319526 18319528 2
Deletion Chr10 18412313 18412314 1
Deletion Chr4 21821108 21821134 26
Deletion Chr1 22704740 22704741 1 OsKitaake01g217100
Deletion Chr6 23190845 23190850 5
Deletion Chr3 25051554 25051560 6
Deletion Chr11 25705943 25705947 4
Deletion Chr5 27140001 27140005 4
Deletion Chr6 28919224 28919227 3
Deletion Chr3 29872467 29872470 3 OsKitaake03g312400
Deletion Chr3 30396456 30396465 9
Deletion Chr4 32330367 32330386 19
Deletion Chr1 32660404 32660408 4 OsKitaake01g331400
Deletion Chr4 34082698 34082703 5
Deletion Chr1 36630276 36630280 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 4680413 4680416 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 2227342 2409280

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 5154016 Chr7 2227333

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37839	C-T	Hetero	INTERGENIC
SBS	Chr1	5342411	C-T	Homo	UTR_5_PRIME
SBS	Chr1	27047300	T-C	Hetero	INTERGENIC
SBS	Chr2	1854527	G-A	Hetero	INTERGENIC
SBS	Chr2	8299148	T-A	Hetero	INTRON
SBS	Chr2	24905766	G-A	Homo	INTERGENIC
SBS	Chr2	28292783	T-C	Hetero	INTERGENIC
SBS	Chr3	2177034	C-G	Hetero	INTERGENIC
SBS	Chr3	11281155	G-T	Hetero	INTERGENIC
SBS	Chr3	14151722	G-A	Hetero	INTERGENIC
SBS	Chr3	33720917	G-C	Hetero	INTERGENIC
SBS	Chr4	11418889	C-T	Hetero	INTERGENIC
SBS	Chr5	7762874	C-T	Hetero	INTERGENIC
SBS	Chr5	10586410	A-G	Hetero	INTRON
SBS	Chr5	19533044	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g153900
SBS	Chr5	20731110	T-G	Hetero	INTERGENIC
SBS	Chr5	21395308	G-C	Hetero	INTERGENIC
SBS	Chr6	182362	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g000700
SBS	Chr6	182370	C-T	Hetero	STOP_GAINED	OsKitaake06g000700
SBS	Chr6	15100909	G-A	Hetero	INTERGENIC
SBS	Chr7	4947187	A-G	Homo	INTERGENIC
SBS	Chr7	9605891	G-A	Hetero	INTERGENIC
SBS	Chr7	10360163	C-A	Hetero	INTRON
SBS	Chr7	11583083	T-C	Hetero	INTERGENIC
SBS	Chr7	23722023	A-G	Hetero	INTERGENIC
SBS	Chr8	21194497	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	24084208	G-A	Homo	INTRON
SBS	Chr8	25734935	G-A	Hetero	INTERGENIC
SBS	Chr10	4060918	G-A	Hetero	INTERGENIC
SBS	Chr10	5706383	G-A	Hetero	INTERGENIC
SBS	Chr10	10379913	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g060300
SBS	Chr12	250674	G-A	Hetero	INTERGENIC
SBS	Chr12	13530399	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1896447	1896452	5
Deletion	Chr6	3335312	3335314	2
Deletion	Chr12	4761367	4761369	2
Deletion	Chr1	5783610	5783613	3
Deletion	Chr4	6379900	6379902	2
Deletion	Chr1	6502819	6502825	6
Deletion	Chr11	8282181	8282186	5
Deletion	Chr6	8864128	8864136	8
Deletion	Chr12	11322464	11322465	1
Deletion	Chr11	11355588	11355601	13
Deletion	Chr6	12069051	12069055	4
Deletion	Chr11	16996339	16996349	10
Deletion	Chr1	18319526	18319528	2
Deletion	Chr10	18412313	18412314	1
Deletion	Chr4	21821108	21821134	26
Deletion	Chr1	22704740	22704741	1	OsKitaake01g217100
Deletion	Chr6	23190845	23190850	5
Deletion	Chr3	25051554	25051560	6
Deletion	Chr11	25705943	25705947	4
Deletion	Chr5	27140001	27140005	4
Deletion	Chr6	28919224	28919227	3
Deletion	Chr3	29872467	29872470	3	OsKitaake03g312400
Deletion	Chr3	30396456	30396465	9
Deletion	Chr4	32330367	32330386	19
Deletion	Chr1	32660404	32660408	4	OsKitaake01g331400
Deletion	Chr4	34082698	34082703	5
Deletion	Chr1	36630276	36630280	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2227342	2409280

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes