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Mutant Information

Mutant Name	FN2217-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2217-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17444699 C-A Hetero INTERGENIC
SBS Chr1 41945431 T-A Homo INTERGENIC
SBS Chr2 9041070 A-T Hetero INTERGENIC
SBS Chr2 9041079 T-A Hetero INTERGENIC
SBS Chr2 23654983 G-A Hetero INTERGENIC
SBS Chr2 31588979 G-T Hetero INTERGENIC
SBS Chr2 31671709 A-G Hetero INTERGENIC
SBS Chr3 17745534 C-T Homo INTERGENIC
SBS Chr3 32212795 A-G Hetero INTERGENIC
SBS Chr4 4384104 G-A Homo INTERGENIC
SBS Chr4 5768957 C-G Hetero INTERGENIC
SBS Chr4 8822422 G-A Hetero INTERGENIC
SBS Chr4 27196916 C-T Hetero INTERGENIC
SBS Chr5 660385 T-C Hetero INTERGENIC
SBS Chr5 5980037 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 18535041 C-T Hetero INTERGENIC
SBS Chr5 22677550 A-G Hetero INTRON
SBS Chr6 2746855 T-A Homo INTRON
SBS Chr6 17778597 G-A Hetero INTERGENIC
SBS Chr7 5307863 C-T Homo INTERGENIC
SBS Chr7 5443604 T-C Hetero UTR_3_PRIME
SBS Chr7 17187340 G-A Hetero INTERGENIC
SBS Chr7 22949285 G-T Hetero INTERGENIC
SBS Chr8 466466 C-A Hetero STOP_GAINED OsKitaake08g006900
SBS Chr8 2512286 C-T Hetero INTERGENIC
SBS Chr8 15458268 C-A Hetero INTERGENIC
SBS Chr8 25478871 T-G Hetero INTERGENIC
SBS Chr8 26416057 A-T Hetero INTERGENIC
SBS Chr9 12449334 C-A Hetero INTERGENIC
SBS Chr9 15567287 G-T Homo INTERGENIC
SBS Chr10 4421465 G-A Hetero INTERGENIC
SBS Chr10 8470374 G-A Hetero INTERGENIC
SBS Chr10 13014496 T-C Hetero INTERGENIC
SBS Chr10 19277210 G-A Hetero INTERGENIC
SBS Chr10 22525855 A-G Homo INTRON
SBS Chr11 187795 G-T Homo INTERGENIC
SBS Chr11 278475 G-A Hetero INTERGENIC
SBS Chr11 839654 A-G Hetero INTERGENIC
SBS Chr11 4276292 C-T Homo INTERGENIC
SBS Chr11 9856467 A-T Hetero INTERGENIC
SBS Chr11 13778431 C-A Hetero INTERGENIC
SBS Chr11 13778432 G-A Hetero INTERGENIC
SBS Chr11 16712452 C-T Homo INTERGENIC
SBS Chr12 18869121 T-A Hetero INTERGENIC
SBS Chr12 20518466 C-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 5050464 5050465 1
Deletion Chr2 9060136 9060139 3
Deletion Chr11 12541001 12668000 126999 OsKitaake11g113600
Deletion Chr11 12676001 12889000 212999 2
Deletion Chr9 14561681 14561686 5
Deletion Chr9 15685053 15685058 5
Deletion Chr9 16515295 16515299 4
Deletion Chr8 17702029 17702035 6
Deletion Chr9 22183506 22183508 2
Deletion Chr5 25925642 25925736 94

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 28060420 28060423 2
Insertion Chr5 13270312 13270315 2
Insertion Chr6 4293455 4293463 7
Insertion Chr8 4073615 4073619 3
Insertion Chr8 27257524 27257527 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 12316811 Chr3 36901129 OsKitaake03g412500
Translocation Chr5 12317105 Chr3 36901134 OsKitaake03g412500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17444699	C-A	Hetero	INTERGENIC
SBS	Chr1	41945431	T-A	Homo	INTERGENIC
SBS	Chr2	9041070	A-T	Hetero	INTERGENIC
SBS	Chr2	9041079	T-A	Hetero	INTERGENIC
SBS	Chr2	23654983	G-A	Hetero	INTERGENIC
SBS	Chr2	31588979	G-T	Hetero	INTERGENIC
SBS	Chr2	31671709	A-G	Hetero	INTERGENIC
SBS	Chr3	17745534	C-T	Homo	INTERGENIC
SBS	Chr3	32212795	A-G	Hetero	INTERGENIC
SBS	Chr4	4384104	G-A	Homo	INTERGENIC
SBS	Chr4	5768957	C-G	Hetero	INTERGENIC
SBS	Chr4	8822422	G-A	Hetero	INTERGENIC
SBS	Chr4	27196916	C-T	Hetero	INTERGENIC
SBS	Chr5	660385	T-C	Hetero	INTERGENIC
SBS	Chr5	5980037	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	18535041	C-T	Hetero	INTERGENIC
SBS	Chr5	22677550	A-G	Hetero	INTRON
SBS	Chr6	2746855	T-A	Homo	INTRON
SBS	Chr6	17778597	G-A	Hetero	INTERGENIC
SBS	Chr7	5307863	C-T	Homo	INTERGENIC
SBS	Chr7	5443604	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	17187340	G-A	Hetero	INTERGENIC
SBS	Chr7	22949285	G-T	Hetero	INTERGENIC
SBS	Chr8	466466	C-A	Hetero	STOP_GAINED	OsKitaake08g006900
SBS	Chr8	2512286	C-T	Hetero	INTERGENIC
SBS	Chr8	15458268	C-A	Hetero	INTERGENIC
SBS	Chr8	25478871	T-G	Hetero	INTERGENIC
SBS	Chr8	26416057	A-T	Hetero	INTERGENIC
SBS	Chr9	12449334	C-A	Hetero	INTERGENIC
SBS	Chr9	15567287	G-T	Homo	INTERGENIC
SBS	Chr10	4421465	G-A	Hetero	INTERGENIC
SBS	Chr10	8470374	G-A	Hetero	INTERGENIC
SBS	Chr10	13014496	T-C	Hetero	INTERGENIC
SBS	Chr10	19277210	G-A	Hetero	INTERGENIC
SBS	Chr10	22525855	A-G	Homo	INTRON
SBS	Chr11	187795	G-T	Homo	INTERGENIC
SBS	Chr11	278475	G-A	Hetero	INTERGENIC
SBS	Chr11	839654	A-G	Hetero	INTERGENIC
SBS	Chr11	4276292	C-T	Homo	INTERGENIC
SBS	Chr11	9856467	A-T	Hetero	INTERGENIC
SBS	Chr11	13778431	C-A	Hetero	INTERGENIC
SBS	Chr11	13778432	G-A	Hetero	INTERGENIC
SBS	Chr11	16712452	C-T	Homo	INTERGENIC
SBS	Chr12	18869121	T-A	Hetero	INTERGENIC
SBS	Chr12	20518466	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	5050464	5050465	1
Deletion	Chr2	9060136	9060139	3
Deletion	Chr11	12541001	12668000	126999	OsKitaake11g113600
Deletion	Chr11	12676001	12889000	212999	2
Deletion	Chr9	14561681	14561686	5
Deletion	Chr9	15685053	15685058	5
Deletion	Chr9	16515295	16515299	4
Deletion	Chr8	17702029	17702035	6
Deletion	Chr9	22183506	22183508	2
Deletion	Chr5	25925642	25925736	94

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	12316811	Chr3	36901129	OsKitaake03g412500
Translocation	Chr5	12317105	Chr3	36901134	OsKitaake03g412500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes