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Mutant Information

Mutant Name	FN2218-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2218-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 82

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4776349 T-C Hetero INTERGENIC
SBS Chr1 13845438 G-A Hetero INTERGENIC
SBS Chr1 20124404 G-A Hetero INTERGENIC
SBS Chr1 21569858 T-C Hetero INTERGENIC
SBS Chr1 29390055 T-C Hetero UTR_5_PRIME
SBS Chr2 10376839 C-A Hetero INTERGENIC
SBS Chr2 10839338 C-T Hetero INTERGENIC
SBS Chr2 17687125 T-A Hetero INTRON
SBS Chr2 20418074 G-A Hetero INTERGENIC
SBS Chr2 22326105 G-A Hetero INTRON
SBS Chr2 26772024 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g267600
SBS Chr2 27338544 G-T Hetero INTERGENIC
SBS Chr2 29399648 C-T Hetero INTERGENIC
SBS Chr3 423219 A-T Homo INTRON
SBS Chr3 2229917 A-G Homo INTERGENIC
SBS Chr3 5528035 G-A Hetero INTRON
SBS Chr3 15748741 C-A Homo INTERGENIC
SBS Chr3 20488222 G-T Hetero INTERGENIC
SBS Chr3 22760184 G-C Homo INTRON
SBS Chr3 22760188 A-T Homo INTRON
SBS Chr3 32877855 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g349300
SBS Chr3 37145405 A-T Hetero INTERGENIC
SBS Chr4 17704428 G-T Hetero INTERGENIC
SBS Chr4 17709220 G-T Hetero INTERGENIC
SBS Chr4 19759835 C-T Hetero INTERGENIC
SBS Chr4 20867980 C-G Hetero INTERGENIC
SBS Chr4 21913737 T-C Hetero INTERGENIC
SBS Chr4 26694294 C-T Hetero INTERGENIC
SBS Chr4 28641474 T-A Hetero INTRON
SBS Chr4 29740617 T-C Hetero INTERGENIC
SBS Chr4 31061143 C-A Hetero INTERGENIC
SBS Chr5 1995361 C-T Hetero INTERGENIC
SBS Chr5 4551810 G-T Hetero INTERGENIC
SBS Chr5 9729565 C-A Hetero INTERGENIC
SBS Chr5 14093673 A-G Homo INTERGENIC
SBS Chr6 736881 G-T Hetero INTERGENIC
SBS Chr6 1211954 G-A Hetero INTERGENIC
SBS Chr6 1211961 G-A Hetero INTERGENIC
SBS Chr6 14138151 C-A Hetero INTRON
SBS Chr6 16213157 C-T Homo INTERGENIC
SBS Chr6 20232300 C-T Homo INTERGENIC
SBS Chr6 20759398 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g185500
SBS Chr6 22889238 G-T Hetero INTERGENIC
SBS Chr6 23425525 C-A Hetero INTERGENIC
SBS Chr6 24819407 T-C Hetero INTERGENIC
SBS Chr6 29425121 G-T Hetero INTRON
SBS Chr7 2368319 G-T Hetero INTERGENIC
SBS Chr7 6284274 G-T Hetero INTERGENIC
SBS Chr7 6441324 T-A Hetero INTERGENIC
SBS Chr7 6954176 T-A Hetero INTERGENIC
SBS Chr7 6954189 T-A Hetero INTERGENIC
SBS Chr7 8566266 C-G Hetero INTERGENIC
SBS Chr7 9409734 G-T Hetero INTERGENIC
SBS Chr7 9872951 G-A Hetero INTERGENIC
SBS Chr7 9873638 G-T Hetero INTERGENIC
SBS Chr7 11135696 C-T Hetero INTERGENIC
SBS Chr7 14071109 A-G Hetero INTERGENIC
SBS Chr7 14113264 A-C Hetero INTRON
SBS Chr7 20385307 A-T Homo INTERGENIC
SBS Chr7 25806587 A-T Hetero INTERGENIC
SBS Chr7 26159223 C-T Homo INTERGENIC
SBS Chr7 26748769 C-T Hetero UTR_3_PRIME
SBS Chr7 27535400 A-T Hetero INTERGENIC
SBS Chr7 28679896 A-G Hetero INTERGENIC
SBS Chr7 28788273 G-A Hetero INTERGENIC
SBS Chr7 28939663 C-T Hetero UTR_3_PRIME
SBS Chr7 29478041 C-T Hetero INTERGENIC
SBS Chr8 3794191 C-A Hetero INTERGENIC
SBS Chr8 7404335 C-A Hetero INTERGENIC
SBS Chr8 8368386 G-A Hetero INTERGENIC
SBS Chr8 10368347 C-A Homo UTR_3_PRIME
SBS Chr8 16452748 T-A Homo INTERGENIC
SBS Chr8 19835155 C-A Hetero INTERGENIC
SBS Chr8 20239931 C-T Homo INTERGENIC
SBS Chr9 4659810 A-G Homo INTERGENIC
SBS Chr9 5574976 G-A Homo INTERGENIC
SBS Chr9 10794260 G-C Hetero INTRON
SBS Chr10 11021372 G-A Hetero INTERGENIC
SBS Chr11 8884102 G-A Hetero INTERGENIC
SBS Chr11 16863918 A-G Homo INTERGENIC
SBS Chr12 2168653 G-T Hetero INTERGENIC
SBS Chr12 14772750 C-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1993033 1993054 21
Deletion Chr11 2345002 2345003 1
Deletion Chr10 4146303 4146305 2
Deletion Chr4 4871479 4871480 1
Deletion Chr11 5755390 5755395 5
Deletion Chr2 8476504 8476510 6
Deletion Chr3 11375410 11375421 11
Deletion Chr5 12132633 12132634 1
Deletion Chr5 15025647 15025650 3
Deletion Chr10 15929440 15929444 4
Deletion Chr12 16172075 16172076 1
Deletion Chr1 16938617 16938618 1
Deletion Chr3 16969316 16969317 1
Deletion Chr4 22625123 22625125 2
Deletion Chr4 22629146 22629148 2
Deletion Chr2 25209379 25209381 2
Deletion Chr7 26133001 26491000 357999 53
Deletion Chr2 31275315 31275316 1
Deletion Chr4 33263927 33263928 1

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 10352596 10352599 2
Insertion Chr4 15074681 15074684 2
Insertion Chr4 19120588 19120592 3
Insertion Chr5 6508369 6508372 2
Insertion Chr8 23135706 23135709 2
Insertion Chr11 16338087 16338090 2
Insertion Chr11 25796822 25796825 2
Insertion Chr12 10785 10788 2
Insertion Chr12 23824876 23824879 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 25702400 25807798
Inversion Chr7 25715129 25945329 OsKitaake07g237100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 188903 Chr6 14709166
Translocation Chr9 188916 Chr6 14708977
Translocation Chr7 23560219 Chr1 25685364 OsKitaake07g206400
Translocation Chr7 23561776 Chr1 25685395 OsKitaake07g206500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4776349	T-C	Hetero	INTERGENIC
SBS	Chr1	13845438	G-A	Hetero	INTERGENIC
SBS	Chr1	20124404	G-A	Hetero	INTERGENIC
SBS	Chr1	21569858	T-C	Hetero	INTERGENIC
SBS	Chr1	29390055	T-C	Hetero	UTR_5_PRIME
SBS	Chr2	10376839	C-A	Hetero	INTERGENIC
SBS	Chr2	10839338	C-T	Hetero	INTERGENIC
SBS	Chr2	17687125	T-A	Hetero	INTRON
SBS	Chr2	20418074	G-A	Hetero	INTERGENIC
SBS	Chr2	22326105	G-A	Hetero	INTRON
SBS	Chr2	26772024	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g267600
SBS	Chr2	27338544	G-T	Hetero	INTERGENIC
SBS	Chr2	29399648	C-T	Hetero	INTERGENIC
SBS	Chr3	423219	A-T	Homo	INTRON
SBS	Chr3	2229917	A-G	Homo	INTERGENIC
SBS	Chr3	5528035	G-A	Hetero	INTRON
SBS	Chr3	15748741	C-A	Homo	INTERGENIC
SBS	Chr3	20488222	G-T	Hetero	INTERGENIC
SBS	Chr3	22760184	G-C	Homo	INTRON
SBS	Chr3	22760188	A-T	Homo	INTRON
SBS	Chr3	32877855	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g349300
SBS	Chr3	37145405	A-T	Hetero	INTERGENIC
SBS	Chr4	17704428	G-T	Hetero	INTERGENIC
SBS	Chr4	17709220	G-T	Hetero	INTERGENIC
SBS	Chr4	19759835	C-T	Hetero	INTERGENIC
SBS	Chr4	20867980	C-G	Hetero	INTERGENIC
SBS	Chr4	21913737	T-C	Hetero	INTERGENIC
SBS	Chr4	26694294	C-T	Hetero	INTERGENIC
SBS	Chr4	28641474	T-A	Hetero	INTRON
SBS	Chr4	29740617	T-C	Hetero	INTERGENIC
SBS	Chr4	31061143	C-A	Hetero	INTERGENIC
SBS	Chr5	1995361	C-T	Hetero	INTERGENIC
SBS	Chr5	4551810	G-T	Hetero	INTERGENIC
SBS	Chr5	9729565	C-A	Hetero	INTERGENIC
SBS	Chr5	14093673	A-G	Homo	INTERGENIC
SBS	Chr6	736881	G-T	Hetero	INTERGENIC
SBS	Chr6	1211954	G-A	Hetero	INTERGENIC
SBS	Chr6	1211961	G-A	Hetero	INTERGENIC
SBS	Chr6	14138151	C-A	Hetero	INTRON
SBS	Chr6	16213157	C-T	Homo	INTERGENIC
SBS	Chr6	20232300	C-T	Homo	INTERGENIC
SBS	Chr6	20759398	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g185500
SBS	Chr6	22889238	G-T	Hetero	INTERGENIC
SBS	Chr6	23425525	C-A	Hetero	INTERGENIC
SBS	Chr6	24819407	T-C	Hetero	INTERGENIC
SBS	Chr6	29425121	G-T	Hetero	INTRON
SBS	Chr7	2368319	G-T	Hetero	INTERGENIC
SBS	Chr7	6284274	G-T	Hetero	INTERGENIC
SBS	Chr7	6441324	T-A	Hetero	INTERGENIC
SBS	Chr7	6954176	T-A	Hetero	INTERGENIC
SBS	Chr7	6954189	T-A	Hetero	INTERGENIC
SBS	Chr7	8566266	C-G	Hetero	INTERGENIC
SBS	Chr7	9409734	G-T	Hetero	INTERGENIC
SBS	Chr7	9872951	G-A	Hetero	INTERGENIC
SBS	Chr7	9873638	G-T	Hetero	INTERGENIC
SBS	Chr7	11135696	C-T	Hetero	INTERGENIC
SBS	Chr7	14071109	A-G	Hetero	INTERGENIC
SBS	Chr7	14113264	A-C	Hetero	INTRON
SBS	Chr7	20385307	A-T	Homo	INTERGENIC
SBS	Chr7	25806587	A-T	Hetero	INTERGENIC
SBS	Chr7	26159223	C-T	Homo	INTERGENIC
SBS	Chr7	26748769	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	27535400	A-T	Hetero	INTERGENIC
SBS	Chr7	28679896	A-G	Hetero	INTERGENIC
SBS	Chr7	28788273	G-A	Hetero	INTERGENIC
SBS	Chr7	28939663	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	29478041	C-T	Hetero	INTERGENIC
SBS	Chr8	3794191	C-A	Hetero	INTERGENIC
SBS	Chr8	7404335	C-A	Hetero	INTERGENIC
SBS	Chr8	8368386	G-A	Hetero	INTERGENIC
SBS	Chr8	10368347	C-A	Homo	UTR_3_PRIME
SBS	Chr8	16452748	T-A	Homo	INTERGENIC
SBS	Chr8	19835155	C-A	Hetero	INTERGENIC
SBS	Chr8	20239931	C-T	Homo	INTERGENIC
SBS	Chr9	4659810	A-G	Homo	INTERGENIC
SBS	Chr9	5574976	G-A	Homo	INTERGENIC
SBS	Chr9	10794260	G-C	Hetero	INTRON
SBS	Chr10	11021372	G-A	Hetero	INTERGENIC
SBS	Chr11	8884102	G-A	Hetero	INTERGENIC
SBS	Chr11	16863918	A-G	Homo	INTERGENIC
SBS	Chr12	2168653	G-T	Hetero	INTERGENIC
SBS	Chr12	14772750	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1993033	1993054	21
Deletion	Chr11	2345002	2345003	1
Deletion	Chr10	4146303	4146305	2
Deletion	Chr4	4871479	4871480	1
Deletion	Chr11	5755390	5755395	5
Deletion	Chr2	8476504	8476510	6
Deletion	Chr3	11375410	11375421	11
Deletion	Chr5	12132633	12132634	1
Deletion	Chr5	15025647	15025650	3
Deletion	Chr10	15929440	15929444	4
Deletion	Chr12	16172075	16172076	1
Deletion	Chr1	16938617	16938618	1
Deletion	Chr3	16969316	16969317	1
Deletion	Chr4	22625123	22625125	2
Deletion	Chr4	22629146	22629148	2
Deletion	Chr2	25209379	25209381	2
Deletion	Chr7	26133001	26491000	357999	53
Deletion	Chr2	31275315	31275316	1
Deletion	Chr4	33263927	33263928	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	25702400	25807798
Inversion	Chr7	25715129	25945329	OsKitaake07g237100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes