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Mutant Information

Mutant Name	FN2219-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2219-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 11361994 T-C Hetero INTERGENIC
SBS Chr2 11362004 A-T Hetero INTERGENIC
SBS Chr2 20161845 T-C Hetero INTERGENIC
SBS Chr2 25544770 G-T Hetero INTERGENIC
SBS Chr2 27585043 T-C Hetero INTERGENIC
SBS Chr3 1792333 T-G Hetero INTERGENIC
SBS Chr3 3488226 C-T Hetero INTERGENIC
SBS Chr3 6320245 A-G Hetero INTERGENIC
SBS Chr3 36553125 A-G Hetero SYNONYMOUS_CODING
SBS Chr4 4681370 T-A Homo INTERGENIC
SBS Chr4 9100836 C-A Homo INTERGENIC
SBS Chr4 22710371 G-A Hetero INTRON
SBS Chr4 30040502 A-T Hetero INTRON
SBS Chr4 33794091 C-A Hetero INTERGENIC
SBS Chr6 8198100 G-A Hetero INTERGENIC
SBS Chr6 11540873 G-T Hetero INTERGENIC
SBS Chr6 12232148 G-A Hetero INTERGENIC
SBS Chr6 19490520 G-A Hetero INTERGENIC
SBS Chr6 23180932 T-A Hetero INTERGENIC
SBS Chr6 23181471 A-G Hetero INTERGENIC
SBS Chr6 25422227 C-T Hetero INTERGENIC
SBS Chr6 29840055 G-T Hetero INTERGENIC
SBS Chr7 15195024 A-T Hetero INTERGENIC
SBS Chr7 24881856 C-T Hetero INTERGENIC
SBS Chr7 25349698 A-C Homo NON_SYNONYMOUS_CODING OsKitaake07g229500
SBS Chr8 20803159 C-G Hetero INTERGENIC
SBS Chr8 21154109 T-C Hetero INTRON
SBS Chr8 26277160 T-C Hetero INTRON
SBS Chr9 4805993 A-G Hetero INTERGENIC
SBS Chr9 7160390 C-T Hetero INTERGENIC
SBS Chr9 8792554 A-G Hetero INTERGENIC
SBS Chr9 11226883 G-T Hetero INTERGENIC
SBS Chr9 20959057 G-A Hetero INTRON
SBS Chr10 281186 C-T Hetero INTERGENIC
SBS Chr10 4351926 A-T Hetero INTERGENIC
SBS Chr10 7624083 G-A Hetero INTERGENIC
SBS Chr10 22761313 C-T Hetero INTERGENIC
SBS Chr11 15385010 A-G Homo INTERGENIC
SBS Chr11 19540194 G-A Hetero INTERGENIC
SBS Chr11 27996348 C-T Hetero INTERGENIC
SBS Chr11 27996355 A-G Hetero INTERGENIC
SBS Chr12 8920613 G-A Hetero INTERGENIC
SBS Chr12 11824424 G-A Hetero INTERGENIC
SBS Chr12 16491639 G-A Hetero INTERGENIC
SBS Chr12 26675040 G-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1928275 1928513 238
Deletion Chr5 4439007 4439013 6 OsKitaake05g051500
Deletion Chr12 7150001 7218000 67999 4
Deletion Chr9 7210516 7210526 10
Deletion Chr1 7789978 7789998 20
Deletion Chr2 14246001 14349000 102999 3
Deletion Chr2 14418001 14818000 399999 15
Deletion Chr8 16275001 16288000 12999
Deletion Chr4 28883273 28883274 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6483230 6483233 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 4351653 5251118
Inversion Chr10 4587438 4771305
Inversion Chr10 4760385 4771309
Inversion Chr3 17446475 18244054 OsKitaake03g214800
Inversion Chr3 18036188 18244064
Inversion Chr3 32802876 33158458
Inversion Chr3 32802886 33158462

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1161865 Chr6 23187924 OsKitaake12g016900
Translocation Chr12 1161886 Chr6 23181147 OsKitaake12g016900
Translocation Chr10 2748473 Chr2 9270672
Translocation Chr3 17453168 Chr2 15545697
Translocation Chr3 18035962 Chr2 14816544
Translocation Chr6 23187979 Chr3 18035963
Translocation Chr6 23189143 Chr2 14249923

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	11361994	T-C	Hetero	INTERGENIC
SBS	Chr2	11362004	A-T	Hetero	INTERGENIC
SBS	Chr2	20161845	T-C	Hetero	INTERGENIC
SBS	Chr2	25544770	G-T	Hetero	INTERGENIC
SBS	Chr2	27585043	T-C	Hetero	INTERGENIC
SBS	Chr3	1792333	T-G	Hetero	INTERGENIC
SBS	Chr3	3488226	C-T	Hetero	INTERGENIC
SBS	Chr3	6320245	A-G	Hetero	INTERGENIC
SBS	Chr3	36553125	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr4	4681370	T-A	Homo	INTERGENIC
SBS	Chr4	9100836	C-A	Homo	INTERGENIC
SBS	Chr4	22710371	G-A	Hetero	INTRON
SBS	Chr4	30040502	A-T	Hetero	INTRON
SBS	Chr4	33794091	C-A	Hetero	INTERGENIC
SBS	Chr6	8198100	G-A	Hetero	INTERGENIC
SBS	Chr6	11540873	G-T	Hetero	INTERGENIC
SBS	Chr6	12232148	G-A	Hetero	INTERGENIC
SBS	Chr6	19490520	G-A	Hetero	INTERGENIC
SBS	Chr6	23180932	T-A	Hetero	INTERGENIC
SBS	Chr6	23181471	A-G	Hetero	INTERGENIC
SBS	Chr6	25422227	C-T	Hetero	INTERGENIC
SBS	Chr6	29840055	G-T	Hetero	INTERGENIC
SBS	Chr7	15195024	A-T	Hetero	INTERGENIC
SBS	Chr7	24881856	C-T	Hetero	INTERGENIC
SBS	Chr7	25349698	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g229500
SBS	Chr8	20803159	C-G	Hetero	INTERGENIC
SBS	Chr8	21154109	T-C	Hetero	INTRON
SBS	Chr8	26277160	T-C	Hetero	INTRON
SBS	Chr9	4805993	A-G	Hetero	INTERGENIC
SBS	Chr9	7160390	C-T	Hetero	INTERGENIC
SBS	Chr9	8792554	A-G	Hetero	INTERGENIC
SBS	Chr9	11226883	G-T	Hetero	INTERGENIC
SBS	Chr9	20959057	G-A	Hetero	INTRON
SBS	Chr10	281186	C-T	Hetero	INTERGENIC
SBS	Chr10	4351926	A-T	Hetero	INTERGENIC
SBS	Chr10	7624083	G-A	Hetero	INTERGENIC
SBS	Chr10	22761313	C-T	Hetero	INTERGENIC
SBS	Chr11	15385010	A-G	Homo	INTERGENIC
SBS	Chr11	19540194	G-A	Hetero	INTERGENIC
SBS	Chr11	27996348	C-T	Hetero	INTERGENIC
SBS	Chr11	27996355	A-G	Hetero	INTERGENIC
SBS	Chr12	8920613	G-A	Hetero	INTERGENIC
SBS	Chr12	11824424	G-A	Hetero	INTERGENIC
SBS	Chr12	16491639	G-A	Hetero	INTERGENIC
SBS	Chr12	26675040	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1928275	1928513	238
Deletion	Chr5	4439007	4439013	6	OsKitaake05g051500
Deletion	Chr12	7150001	7218000	67999	4
Deletion	Chr9	7210516	7210526	10
Deletion	Chr1	7789978	7789998	20
Deletion	Chr2	14246001	14349000	102999	3
Deletion	Chr2	14418001	14818000	399999	15
Deletion	Chr8	16275001	16288000	12999
Deletion	Chr4	28883273	28883274	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4351653	5251118
Inversion	Chr10	4587438	4771305
Inversion	Chr10	4760385	4771309
Inversion	Chr3	17446475	18244054	OsKitaake03g214800
Inversion	Chr3	18036188	18244064
Inversion	Chr3	32802876	33158458
Inversion	Chr3	32802886	33158462

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes