Search Kitaake

Mutant Information

Mutant Name	FN2221-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2221-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15244025 C-G Homo INTERGENIC
SBS Chr1 36037731 T-G Hetero INTERGENIC
SBS Chr1 38142591 C-A Hetero INTERGENIC
SBS Chr2 7355147 T-A Hetero INTERGENIC
SBS Chr2 17860225 C-T Hetero INTERGENIC
SBS Chr2 30337712 G-T Hetero INTERGENIC
SBS Chr3 15542210 T-C Hetero INTERGENIC
SBS Chr3 18503550 G-A Hetero INTRON
SBS Chr3 24032622 T-G Homo INTERGENIC
SBS Chr3 34550829 G-A Hetero INTERGENIC
SBS Chr4 8229102 T-C Hetero INTERGENIC
SBS Chr4 10560634 T-A Hetero INTERGENIC
SBS Chr4 14533311 A-C Hetero INTERGENIC
SBS Chr5 2913401 C-T Hetero INTRON
SBS Chr5 9020466 C-T Homo INTERGENIC
SBS Chr6 14441252 T-C Hetero INTERGENIC
SBS Chr7 7361527 C-T Homo INTERGENIC
SBS Chr7 13847077 T-C Homo INTERGENIC
SBS Chr7 15260624 C-T Hetero INTERGENIC
SBS Chr8 8273452 C-T Hetero INTERGENIC
SBS Chr8 21952175 G-T Hetero INTERGENIC
SBS Chr8 22449857 C-T Hetero INTERGENIC
SBS Chr9 3269725 G-A Hetero INTERGENIC
SBS Chr9 3269726 G-A Hetero INTERGENIC
SBS Chr9 3300672 G-A Hetero INTERGENIC
SBS Chr9 3543477 T-G Hetero INTERGENIC
SBS Chr9 4837263 T-C Hetero INTRON
SBS Chr9 12171392 G-A Hetero INTERGENIC
SBS Chr10 17071286 A-G Hetero INTERGENIC
SBS Chr11 7724556 T-C Homo INTERGENIC
SBS Chr11 9237076 C-A Hetero INTERGENIC
SBS Chr11 9237077 G-A Hetero INTERGENIC
SBS Chr11 17617324 C-T Hetero INTERGENIC
SBS Chr12 735402 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 7060191 T-G Hetero INTERGENIC
SBS Chr12 10973264 A-G Homo INTERGENIC
SBS Chr12 11134910 A-C Homo INTERGENIC
SBS Chr12 12518871 C-T Homo INTERGENIC
SBS Chr12 19792975 C-G Homo INTERGENIC
SBS Chr12 22012108 G-T Homo INTERGENIC
SBS Chr12 23839725 A-G Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 748627 748631 4
Deletion Chr6 763056 763064 8
Deletion Chr12 2647504 2647517 13
Deletion Chr11 3581854 3581884 30
Deletion Chr10 4477775 4477777 2
Deletion Chr10 6610477 6610483 6
Deletion Chr10 6691109 6691119 10
Deletion Chr11 7123476 7123486 10 OsKitaake11g080900
Deletion Chr10 10438030 10438032 2
Deletion Chr4 10801471 10801475 4
Deletion Chr5 14164931 14164932 1
Deletion Chr2 15831431 15831434 3
Deletion Chr2 16531509 16531516 7
Deletion Chr2 17149001 17174000 24999 OsKitaake02g173200
Deletion Chr2 22986130 22986138 8
Deletion Chr4 23363957 23363970 13
Deletion Chr2 25443730 25443731 1
Deletion Chr2 26682882 26682902 20
Deletion Chr5 28277730 28277738 8 OsKitaake05g262800
Deletion Chr2 28525193 28525194 1 OsKitaake02g287300

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23591868 23591871 2
Insertion Chr1 32299490 32299493 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 15011910 15208613 OsKitaake07g125600
Inversion Chr7 15208622 15495973

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15244025	C-G	Homo	INTERGENIC
SBS	Chr1	36037731	T-G	Hetero	INTERGENIC
SBS	Chr1	38142591	C-A	Hetero	INTERGENIC
SBS	Chr2	7355147	T-A	Hetero	INTERGENIC
SBS	Chr2	17860225	C-T	Hetero	INTERGENIC
SBS	Chr2	30337712	G-T	Hetero	INTERGENIC
SBS	Chr3	15542210	T-C	Hetero	INTERGENIC
SBS	Chr3	18503550	G-A	Hetero	INTRON
SBS	Chr3	24032622	T-G	Homo	INTERGENIC
SBS	Chr3	34550829	G-A	Hetero	INTERGENIC
SBS	Chr4	8229102	T-C	Hetero	INTERGENIC
SBS	Chr4	10560634	T-A	Hetero	INTERGENIC
SBS	Chr4	14533311	A-C	Hetero	INTERGENIC
SBS	Chr5	2913401	C-T	Hetero	INTRON
SBS	Chr5	9020466	C-T	Homo	INTERGENIC
SBS	Chr6	14441252	T-C	Hetero	INTERGENIC
SBS	Chr7	7361527	C-T	Homo	INTERGENIC
SBS	Chr7	13847077	T-C	Homo	INTERGENIC
SBS	Chr7	15260624	C-T	Hetero	INTERGENIC
SBS	Chr8	8273452	C-T	Hetero	INTERGENIC
SBS	Chr8	21952175	G-T	Hetero	INTERGENIC
SBS	Chr8	22449857	C-T	Hetero	INTERGENIC
SBS	Chr9	3269725	G-A	Hetero	INTERGENIC
SBS	Chr9	3269726	G-A	Hetero	INTERGENIC
SBS	Chr9	3300672	G-A	Hetero	INTERGENIC
SBS	Chr9	3543477	T-G	Hetero	INTERGENIC
SBS	Chr9	4837263	T-C	Hetero	INTRON
SBS	Chr9	12171392	G-A	Hetero	INTERGENIC
SBS	Chr10	17071286	A-G	Hetero	INTERGENIC
SBS	Chr11	7724556	T-C	Homo	INTERGENIC
SBS	Chr11	9237076	C-A	Hetero	INTERGENIC
SBS	Chr11	9237077	G-A	Hetero	INTERGENIC
SBS	Chr11	17617324	C-T	Hetero	INTERGENIC
SBS	Chr12	735402	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	7060191	T-G	Hetero	INTERGENIC
SBS	Chr12	10973264	A-G	Homo	INTERGENIC
SBS	Chr12	11134910	A-C	Homo	INTERGENIC
SBS	Chr12	12518871	C-T	Homo	INTERGENIC
SBS	Chr12	19792975	C-G	Homo	INTERGENIC
SBS	Chr12	22012108	G-T	Homo	INTERGENIC
SBS	Chr12	23839725	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	748627	748631	4
Deletion	Chr6	763056	763064	8
Deletion	Chr12	2647504	2647517	13
Deletion	Chr11	3581854	3581884	30
Deletion	Chr10	4477775	4477777	2
Deletion	Chr10	6610477	6610483	6
Deletion	Chr10	6691109	6691119	10
Deletion	Chr11	7123476	7123486	10	OsKitaake11g080900
Deletion	Chr10	10438030	10438032	2
Deletion	Chr4	10801471	10801475	4
Deletion	Chr5	14164931	14164932	1
Deletion	Chr2	15831431	15831434	3
Deletion	Chr2	16531509	16531516	7
Deletion	Chr2	17149001	17174000	24999	OsKitaake02g173200
Deletion	Chr2	22986130	22986138	8
Deletion	Chr4	23363957	23363970	13
Deletion	Chr2	25443730	25443731	1
Deletion	Chr2	26682882	26682902	20
Deletion	Chr5	28277730	28277738	8	OsKitaake05g262800
Deletion	Chr2	28525193	28525194	1	OsKitaake02g287300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15011910	15208613	OsKitaake07g125600
Inversion	Chr7	15208622	15495973

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes