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| Mutant Information |
|---|
| Mutant Name | FN2222-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2222-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6847169 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 13815419 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 13840269 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 8007832 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 18705326 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13811338 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 5778667 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g076300 |
| SBS | Chr6 | 19434129 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 27828632 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11980659 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12023200 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 24726959 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g220600 |
| SBS | Chr8 | 5300787 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 17448710 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 9450372 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13070987 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 15997330 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 16001235 | T-A | Homo | INTRON | |
| SBS | Chr10 | 16001236 | T-A | Homo | INTRON | |
| SBS | Chr11 | 11960511 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12973950 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 24841070 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16912922 | G-A | Homo | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1404275 | 1404276 | 1 | |
| Deletion | Chr10 | 4224335 | 4224348 | 13 | |
| Deletion | Chr10 | 5371918 | 5371924 | 6 | |
| Deletion | Chr10 | 6937585 | 6937589 | 4 | |
| Deletion | Chr10 | 8090157 | 8090161 | 4 | |
| Deletion | Chr12 | 8090790 | 8090801 | 11 | |
| Deletion | Chr3 | 11703029 | 11703030 | 1 | |
| Deletion | Chr9 | 12548679 | 12548680 | 1 | |
| Deletion | Chr2 | 13326643 | 13326648 | 5 | |
| Deletion | Chr2 | 15350211 | 15350214 | 3 | |
| Deletion | Chr4 | 15868445 | 15868446 | 1 | OsKitaake04g076700 |
| Deletion | Chr3 | 16465228 | 16465233 | 5 | |
| Deletion | Chr4 | 17069847 | 17069849 | 2 | |
| Deletion | Chr12 | 21194732 | 21194733 | 1 | |
| Deletion | Chr3 | 23426889 | 23426895 | 6 | |
| Deletion | Chr2 | 26000008 | 26000009 | 1 | |
| Deletion | Chr8 | 29021114 | 29021116 | 2 | |
| Deletion | Chr1 | 31482133 | 31482211 | 78 | OsKitaake01g316000 |
| Deletion | Chr2 | 36398982 | 36398985 | 3 | OsKitaake02g385700 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 13796617 | 14038384 | |
| Inversion | Chr4 | 13796621 | 14038383 |