Search Kitaake

Mutant Information

Mutant Name	FN2261-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2261-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6598806 A-T Hetero INTRON
SBS Chr1 12451527 G-A Hetero INTERGENIC
SBS Chr1 38647052 G-T Hetero INTERGENIC
SBS Chr1 41949490 A-G Hetero INTRON
SBS Chr2 7032394 T-C Hetero INTERGENIC
SBS Chr2 22438976 T-C Hetero INTRON
SBS Chr2 26828247 C-T Homo INTERGENIC
SBS Chr3 5628752 G-T Hetero INTERGENIC
SBS Chr3 11719602 A-C Homo INTERGENIC
SBS Chr3 15981564 G-T Hetero INTERGENIC
SBS Chr3 19309064 G-T Hetero INTERGENIC
SBS Chr3 37156010 G-A Hetero INTERGENIC
SBS Chr4 14908611 G-A Homo INTERGENIC
SBS Chr4 25196502 G-T Hetero INTERGENIC
SBS Chr4 28726237 G-T Hetero INTERGENIC
SBS Chr4 31818052 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g252400
SBS Chr5 18795249 G-A Hetero INTERGENIC
SBS Chr5 24923219 G-A Hetero INTERGENIC
SBS Chr5 28449780 T-A Homo INTERGENIC
SBS Chr5 28506713 C-T Hetero INTERGENIC
SBS Chr6 21501385 C-A Homo INTERGENIC
SBS Chr7 9825785 G-A Homo INTERGENIC
SBS Chr8 8581098 G-A Homo INTERGENIC
SBS Chr8 12373942 C-G Hetero INTERGENIC
SBS Chr8 12686730 G-A Hetero INTERGENIC
SBS Chr8 27841033 G-A Homo INTERGENIC
SBS Chr9 10605216 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 17663397 A-G Hetero INTERGENIC
SBS Chr10 16820547 T-C Hetero INTERGENIC
SBS Chr11 1774459 G-A Hetero UTR_3_PRIME
SBS Chr12 6568198 A-G Hetero INTERGENIC
SBS Chr12 7297402 C-T Hetero INTERGENIC
SBS Chr12 9987612 A-G Homo INTERGENIC
SBS Chr12 12895902 C-T Hetero INTERGENIC
SBS Chr12 17674791 A-G Homo INTERGENIC
SBS Chr12 19891522 T-A Hetero INTERGENIC
SBS Chr12 25834653 A-G Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 106072 106073 1
Deletion Chr12 2974389 2974390 1
Deletion Chr1 3267536 3267542 6
Deletion Chr11 4866233 4866235 2
Deletion Chr5 5935294 5935302 8
Deletion Chr3 6336171 6336191 20
Deletion Chr7 9825815 9825818 3
Deletion Chr5 16765822 16765830 8
Deletion Chr2 16975456 16975457 1
Deletion Chr8 17748709 17748711 2
Deletion Chr2 18402626 18402628 2
Deletion Chr1 18860875 18860877 2
Deletion Chr8 19616506 19616510 4
Deletion Chr4 20334394 20334404 10
Deletion Chr12 20410540 20410541 1
Deletion Chr1 20826077 20826078 1
Deletion Chr9 21429328 21429329 1
Deletion Chr5 22795531 22795550 19
Deletion Chr3 23561679 23561680 1 OsKitaake03g253300
Deletion Chr5 30068147 30068155 8
Deletion Chr3 30665546 30665557 11
Deletion Chr4 31356828 31356846 18

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13704439 13704442 2
Insertion Chr4 16460654 16460656 1
Insertion Chr4 33203140 33203142 1
Insertion Chr12 15058611 15058613 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6598806	A-T	Hetero	INTRON
SBS	Chr1	12451527	G-A	Hetero	INTERGENIC
SBS	Chr1	38647052	G-T	Hetero	INTERGENIC
SBS	Chr1	41949490	A-G	Hetero	INTRON
SBS	Chr2	7032394	T-C	Hetero	INTERGENIC
SBS	Chr2	22438976	T-C	Hetero	INTRON
SBS	Chr2	26828247	C-T	Homo	INTERGENIC
SBS	Chr3	5628752	G-T	Hetero	INTERGENIC
SBS	Chr3	11719602	A-C	Homo	INTERGENIC
SBS	Chr3	15981564	G-T	Hetero	INTERGENIC
SBS	Chr3	19309064	G-T	Hetero	INTERGENIC
SBS	Chr3	37156010	G-A	Hetero	INTERGENIC
SBS	Chr4	14908611	G-A	Homo	INTERGENIC
SBS	Chr4	25196502	G-T	Hetero	INTERGENIC
SBS	Chr4	28726237	G-T	Hetero	INTERGENIC
SBS	Chr4	31818052	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g252400
SBS	Chr5	18795249	G-A	Hetero	INTERGENIC
SBS	Chr5	24923219	G-A	Hetero	INTERGENIC
SBS	Chr5	28449780	T-A	Homo	INTERGENIC
SBS	Chr5	28506713	C-T	Hetero	INTERGENIC
SBS	Chr6	21501385	C-A	Homo	INTERGENIC
SBS	Chr7	9825785	G-A	Homo	INTERGENIC
SBS	Chr8	8581098	G-A	Homo	INTERGENIC
SBS	Chr8	12373942	C-G	Hetero	INTERGENIC
SBS	Chr8	12686730	G-A	Hetero	INTERGENIC
SBS	Chr8	27841033	G-A	Homo	INTERGENIC
SBS	Chr9	10605216	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17663397	A-G	Hetero	INTERGENIC
SBS	Chr10	16820547	T-C	Hetero	INTERGENIC
SBS	Chr11	1774459	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	6568198	A-G	Hetero	INTERGENIC
SBS	Chr12	7297402	C-T	Hetero	INTERGENIC
SBS	Chr12	9987612	A-G	Homo	INTERGENIC
SBS	Chr12	12895902	C-T	Hetero	INTERGENIC
SBS	Chr12	17674791	A-G	Homo	INTERGENIC
SBS	Chr12	19891522	T-A	Hetero	INTERGENIC
SBS	Chr12	25834653	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	106072	106073	1
Deletion	Chr12	2974389	2974390	1
Deletion	Chr1	3267536	3267542	6
Deletion	Chr11	4866233	4866235	2
Deletion	Chr5	5935294	5935302	8
Deletion	Chr3	6336171	6336191	20
Deletion	Chr7	9825815	9825818	3
Deletion	Chr5	16765822	16765830	8
Deletion	Chr2	16975456	16975457	1
Deletion	Chr8	17748709	17748711	2
Deletion	Chr2	18402626	18402628	2
Deletion	Chr1	18860875	18860877	2
Deletion	Chr8	19616506	19616510	4
Deletion	Chr4	20334394	20334404	10
Deletion	Chr12	20410540	20410541	1
Deletion	Chr1	20826077	20826078	1
Deletion	Chr9	21429328	21429329	1
Deletion	Chr5	22795531	22795550	19
Deletion	Chr3	23561679	23561680	1	OsKitaake03g253300
Deletion	Chr5	30068147	30068155	8
Deletion	Chr3	30665546	30665557	11
Deletion	Chr4	31356828	31356846	18

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes