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Mutant Information

Mutant Name	FN2268-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2268-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 68

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 616952 A-G Homo INTERGENIC
SBS Chr1 29765450 C-T Hetero INTERGENIC
SBS Chr1 37626055 G-A Hetero INTRON
SBS Chr1 37626063 G-A Hetero INTRON
SBS Chr1 39351953 T-C Hetero INTERGENIC
SBS Chr1 41648407 T-A Hetero INTERGENIC
SBS Chr2 7002590 A-G Hetero INTERGENIC
SBS Chr2 15428535 C-T Hetero INTERGENIC
SBS Chr2 21584234 G-A Hetero INTERGENIC
SBS Chr2 23027292 G-A Hetero INTERGENIC
SBS Chr2 31743043 C-A Hetero INTERGENIC
SBS Chr3 599439 C-T Hetero INTERGENIC
SBS Chr3 2547092 G-A Hetero INTERGENIC
SBS Chr3 16766506 A-T Homo INTERGENIC
SBS Chr3 17522023 C-T Hetero INTERGENIC
SBS Chr3 19105757 G-C Homo INTERGENIC
SBS Chr3 22104467 T-C Hetero INTERGENIC
SBS Chr3 22418904 C-T Hetero INTERGENIC
SBS Chr3 23436785 C-T Hetero INTERGENIC
SBS Chr3 30084677 A-G Hetero INTERGENIC
SBS Chr3 30669204 G-A Hetero INTERGENIC
SBS Chr4 1852815 C-T Homo INTERGENIC
SBS Chr4 3910919 C-G Hetero INTERGENIC
SBS Chr4 11007228 C-T Homo INTERGENIC
SBS Chr4 11429998 G-C Hetero INTERGENIC
SBS Chr4 14038529 C-T Hetero INTERGENIC
SBS Chr4 16649258 G-T Homo NON_SYNONYMOUS_CODING OsKitaake04g081600
SBS Chr4 16982494 T-C Hetero INTERGENIC
SBS Chr4 18946454 T-C Hetero INTERGENIC
SBS Chr4 21994218 G-A Hetero INTERGENIC
SBS Chr5 270700 G-T Hetero INTERGENIC
SBS Chr5 3366136 T-A Hetero INTERGENIC
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 7544121 T-G Homo STOP_GAINED OsKitaake05g075600
SBS Chr5 24714430 C-T Hetero INTERGENIC
SBS Chr6 18232112 G-T Hetero INTERGENIC
SBS Chr6 22659513 C-T Hetero INTERGENIC
SBS Chr6 26992346 A-C Homo INTRON
SBS Chr7 7731522 G-A Hetero INTRON
SBS Chr7 7934372 C-T Hetero INTERGENIC
SBS Chr7 13156344 C-T Hetero INTRON
SBS Chr7 16573125 G-A Hetero INTERGENIC
SBS Chr7 26229232 T-A Hetero INTRON
SBS Chr7 27557923 G-A Homo INTERGENIC
SBS Chr8 5089563 G-A Hetero UTR_5_PRIME
SBS Chr8 14165396 G-A Homo INTRON
SBS Chr8 16941850 T-C Homo INTERGENIC
SBS Chr9 3524986 G-A Hetero INTERGENIC
SBS Chr9 7064250 C-A Hetero INTERGENIC
SBS Chr9 11428216 C-T Hetero INTERGENIC
SBS Chr9 13318503 A-T Hetero INTRON
SBS Chr9 15186287 G-C Hetero INTRON
SBS Chr10 12473375 C-G Hetero INTRON
SBS Chr10 15164071 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g096300
SBS Chr10 23726990 C-T Hetero INTERGENIC
SBS Chr11 292577 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g002550
SBS Chr11 292578 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g002550
SBS Chr11 9331909 C-T Hetero INTERGENIC
SBS Chr11 14252078 G-C Hetero INTERGENIC
SBS Chr11 14674394 A-C Homo INTERGENIC
SBS Chr11 19147727 A-G Hetero INTERGENIC
SBS Chr11 22800217 G-A Hetero INTERGENIC
SBS Chr12 2486577 C-T Homo INTERGENIC
SBS Chr12 10913766 G-A Hetero INTERGENIC
SBS Chr12 12631129 T-C Hetero INTERGENIC
SBS Chr12 13748374 A-G Hetero INTERGENIC
SBS Chr12 14826435 T-C Hetero INTERGENIC
SBS Chr12 26395043 G-T Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1489001 1499000 9999 2
Deletion Chr3 2320327 2320328 1
Deletion Chr3 4149589 4149591 2
Deletion Chr5 4259014 4259025 11
Deletion Chr7 5241372 5241375 3
Deletion Chr1 6601618 6601626 8
Deletion Chr6 8635139 8635141 2
Deletion Chr7 9916526 9916533 7
Deletion Chr7 10177909 10177917 8
Deletion Chr9 12356754 12356756 2
Deletion Chr3 13406077 13406080 3
Deletion Chr8 13821947 13821987 40
Deletion Chr1 15538338 15538346 8
Deletion Chr6 16959077 16959081 4
Deletion Chr5 18381001 18760000 378999 27
Deletion Chr5 18776001 18956000 179999 21
Deletion Chr10 18830442 18830443 1
Deletion Chr6 23472678 23472683 5
Deletion Chr1 24482990 24483001 11
Deletion Chr8 26897994 26897995 1
Deletion Chr8 28254007 28254009 2
Deletion Chr6 28301868 28301872 4
Deletion Chr8 28506548 28506550 2
Deletion Chr4 33757825 33757827 2
Deletion Chr1 34936968 34936969 1
Deletion Chr2 36419917 36419934 17

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 26306457 26306459 1
Insertion Chr3 10486391 10486399 7
Insertion Chr5 19905754 19905759 4
Insertion Chr5 27601101 27601106 4
Insertion Chr9 16538394 16538397 2 OsKitaake09g120500
Insertion Chr10 16021579 16021581 1
Insertion Chr11 4069927 4069930 2
Insertion Chr11 12641742 12641746 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 26752004 27547621
Inversion Chr5 26752031 27547629

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	616952	A-G	Homo	INTERGENIC
SBS	Chr1	29765450	C-T	Hetero	INTERGENIC
SBS	Chr1	37626055	G-A	Hetero	INTRON
SBS	Chr1	37626063	G-A	Hetero	INTRON
SBS	Chr1	39351953	T-C	Hetero	INTERGENIC
SBS	Chr1	41648407	T-A	Hetero	INTERGENIC
SBS	Chr2	7002590	A-G	Hetero	INTERGENIC
SBS	Chr2	15428535	C-T	Hetero	INTERGENIC
SBS	Chr2	21584234	G-A	Hetero	INTERGENIC
SBS	Chr2	23027292	G-A	Hetero	INTERGENIC
SBS	Chr2	31743043	C-A	Hetero	INTERGENIC
SBS	Chr3	599439	C-T	Hetero	INTERGENIC
SBS	Chr3	2547092	G-A	Hetero	INTERGENIC
SBS	Chr3	16766506	A-T	Homo	INTERGENIC
SBS	Chr3	17522023	C-T	Hetero	INTERGENIC
SBS	Chr3	19105757	G-C	Homo	INTERGENIC
SBS	Chr3	22104467	T-C	Hetero	INTERGENIC
SBS	Chr3	22418904	C-T	Hetero	INTERGENIC
SBS	Chr3	23436785	C-T	Hetero	INTERGENIC
SBS	Chr3	30084677	A-G	Hetero	INTERGENIC
SBS	Chr3	30669204	G-A	Hetero	INTERGENIC
SBS	Chr4	1852815	C-T	Homo	INTERGENIC
SBS	Chr4	3910919	C-G	Hetero	INTERGENIC
SBS	Chr4	11007228	C-T	Homo	INTERGENIC
SBS	Chr4	11429998	G-C	Hetero	INTERGENIC
SBS	Chr4	14038529	C-T	Hetero	INTERGENIC
SBS	Chr4	16649258	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g081600
SBS	Chr4	16982494	T-C	Hetero	INTERGENIC
SBS	Chr4	18946454	T-C	Hetero	INTERGENIC
SBS	Chr4	21994218	G-A	Hetero	INTERGENIC
SBS	Chr5	270700	G-T	Hetero	INTERGENIC
SBS	Chr5	3366136	T-A	Hetero	INTERGENIC
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	7544121	T-G	Homo	STOP_GAINED	OsKitaake05g075600
SBS	Chr5	24714430	C-T	Hetero	INTERGENIC
SBS	Chr6	18232112	G-T	Hetero	INTERGENIC
SBS	Chr6	22659513	C-T	Hetero	INTERGENIC
SBS	Chr6	26992346	A-C	Homo	INTRON
SBS	Chr7	7731522	G-A	Hetero	INTRON
SBS	Chr7	7934372	C-T	Hetero	INTERGENIC
SBS	Chr7	13156344	C-T	Hetero	INTRON
SBS	Chr7	16573125	G-A	Hetero	INTERGENIC
SBS	Chr7	26229232	T-A	Hetero	INTRON
SBS	Chr7	27557923	G-A	Homo	INTERGENIC
SBS	Chr8	5089563	G-A	Hetero	UTR_5_PRIME
SBS	Chr8	14165396	G-A	Homo	INTRON
SBS	Chr8	16941850	T-C	Homo	INTERGENIC
SBS	Chr9	3524986	G-A	Hetero	INTERGENIC
SBS	Chr9	7064250	C-A	Hetero	INTERGENIC
SBS	Chr9	11428216	C-T	Hetero	INTERGENIC
SBS	Chr9	13318503	A-T	Hetero	INTRON
SBS	Chr9	15186287	G-C	Hetero	INTRON
SBS	Chr10	12473375	C-G	Hetero	INTRON
SBS	Chr10	15164071	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g096300
SBS	Chr10	23726990	C-T	Hetero	INTERGENIC
SBS	Chr11	292577	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g002550
SBS	Chr11	292578	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g002550
SBS	Chr11	9331909	C-T	Hetero	INTERGENIC
SBS	Chr11	14252078	G-C	Hetero	INTERGENIC
SBS	Chr11	14674394	A-C	Homo	INTERGENIC
SBS	Chr11	19147727	A-G	Hetero	INTERGENIC
SBS	Chr11	22800217	G-A	Hetero	INTERGENIC
SBS	Chr12	2486577	C-T	Homo	INTERGENIC
SBS	Chr12	10913766	G-A	Hetero	INTERGENIC
SBS	Chr12	12631129	T-C	Hetero	INTERGENIC
SBS	Chr12	13748374	A-G	Hetero	INTERGENIC
SBS	Chr12	14826435	T-C	Hetero	INTERGENIC
SBS	Chr12	26395043	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1489001	1499000	9999	2
Deletion	Chr3	2320327	2320328	1
Deletion	Chr3	4149589	4149591	2
Deletion	Chr5	4259014	4259025	11
Deletion	Chr7	5241372	5241375	3
Deletion	Chr1	6601618	6601626	8
Deletion	Chr6	8635139	8635141	2
Deletion	Chr7	9916526	9916533	7
Deletion	Chr7	10177909	10177917	8
Deletion	Chr9	12356754	12356756	2
Deletion	Chr3	13406077	13406080	3
Deletion	Chr8	13821947	13821987	40
Deletion	Chr1	15538338	15538346	8
Deletion	Chr6	16959077	16959081	4
Deletion	Chr5	18381001	18760000	378999	27
Deletion	Chr5	18776001	18956000	179999	21
Deletion	Chr10	18830442	18830443	1
Deletion	Chr6	23472678	23472683	5
Deletion	Chr1	24482990	24483001	11
Deletion	Chr8	26897994	26897995	1
Deletion	Chr8	28254007	28254009	2
Deletion	Chr6	28301868	28301872	4
Deletion	Chr8	28506548	28506550	2
Deletion	Chr4	33757825	33757827	2
Deletion	Chr1	34936968	34936969	1
Deletion	Chr2	36419917	36419934	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	26752004	27547621
Inversion	Chr5	26752031	27547629

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes