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| Mutant Information |
|---|
| Mutant Name | FN2280-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2280-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19565438 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 22097703 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 29003575 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 34263979 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g356000 |
| SBS | Chr3 | 8530656 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17535031 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19367073 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 29702604 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 34429636 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1606536 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4222107 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8041690 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8098599 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15702690 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 5265284 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 6849696 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 7562711 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 10057043 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 13886910 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 26430577 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g234200 |
| SBS | Chr6 | 650790 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 11249242 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12571044 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g134200 |
| SBS | Chr7 | 18864556 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 7834476 | A-T | Homo | INTRON | |
| SBS | Chr10 | 7834477 | A-T | Homo | INTRON | |
| SBS | Chr10 | 13973637 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 230992 | T-G | Hetero | INTRON | |
| SBS | Chr12 | 3104333 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g045150 |
| SBS | Chr12 | 14431910 | G-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 4949841 | 4949844 | 3 | OsKitaake11g063100 |
| Deletion | Chr11 | 5578657 | 5578660 | 3 | |
| Deletion | Chr11 | 9470608 | 9470637 | 29 | |
| Deletion | Chr2 | 11849988 | 11849989 | 1 | |
| Deletion | Chr2 | 12147005 | 12147013 | 8 | |
| Deletion | Chr5 | 13270833 | 13270835 | 2 | |
| Deletion | Chr2 | 20080992 | 20080996 | 4 | |
| Deletion | Chr8 | 28306405 | 28306408 | 3 | |
| Deletion | Chr5 | 29370001 | 29390000 | 19999 | 2 |
| Deletion | Chr2 | 29670107 | 29670110 | 3 | |
| Deletion | Chr2 | 34230298 | 34230299 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 20618464 | 20618467 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 13435696 | 14105988 | OsKitaake12g111400 |
| Inversion | Chr12 | 13435701 | 14105989 | OsKitaake12g111400 |
| Inversion | Chr11 | 23193684 | 23557500 | |
| Inversion | Chr11 | 23557484 | 23767213 | OsKitaake11g190000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 33309682 | Chr3 | 37200882 | |
| Translocation | Chr4 | 33370901 | Chr3 | 37200880 |