Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN242-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN242-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 8222746 | G-A | Homo | INTRON | |
| SBS | Chr2 | 11494457 | A-G | Homo | INTRON | |
| SBS | Chr2 | 11495221 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g133000 |
| SBS | Chr2 | 19825190 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 34997188 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 2174228 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 6808633 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 8177124 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14864439 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14864440 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 23941287 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3848813 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 10148202 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 1904566 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 11274863 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 14406368 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 1563172 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 2610308 | C-T | Homo | INTRON | |
| SBS | Chr11 | 18053142 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1877238 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 14650542 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 18117097 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21735857 | A-G | Hetero | INTRON |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 18326 | 18327 | 1 | |
| Deletion | Chr9 | 728429 | 728496 | 67 | |
| Deletion | Chr10 | 8676916 | 8676917 | 1 | |
| Deletion | Chr9 | 10907477 | 10907603 | 126 | |
| Deletion | Chr5 | 11719001 | 12091000 | 371999 | 13 |
| Deletion | Chr5 | 12095001 | 12122000 | 26999 | OsKitaake05g097700 |
| Deletion | Chr6 | 12928068 | 12928071 | 3 | |
| Deletion | Chr12 | 14442872 | 14442873 | 1 | |
| Deletion | Chr1 | 16830461 | 16830467 | 6 | |
| Deletion | Chr1 | 17283622 | 17284286 | 664 | |
| Deletion | Chr4 | 22127001 | 22173000 | 45999 | OsKitaake04g129500 |
| Deletion | Chr2 | 32364995 | 32365001 | 6 | |
| Deletion | Chr1 | 43225364 | 43225372 | 8 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 11707370 | 11707373 | 2 | |
| Insertion | Chr12 | 11713778 | 11713780 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 8519357 | 9440446 | OsKitaake08g077800 |
| Inversion | Chr12 | 17395919 | 17439076 | OsKitaake12g128200 |
| Inversion | Chr12 | 17395932 | 17439077 | OsKitaake12g128200 |
| Inversion | Chr12 | 25727639 | 26025367 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 8516218 | Chr3 | 21229718 | |
| Translocation | Chr8 | 8519311 | Chr3 | 21229711 | OsKitaake08g077800 |