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Mutant Information

Mutant Name	FN2440 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2440 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6119454 G-T Hetero INTERGENIC
SBS Chr1 8120984 C-T Hetero INTERGENIC
SBS Chr1 11817740 G-C Hetero INTRON
SBS Chr1 11945350 C-A Hetero INTERGENIC
SBS Chr1 29991584 C-T Hetero INTERGENIC
SBS Chr1 37579933 C-A Hetero INTERGENIC
SBS Chr1 40192831 A-T Hetero INTERGENIC
SBS Chr2 3269601 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 16984780 T-C Hetero INTERGENIC
SBS Chr2 25087419 T-C Hetero INTERGENIC
SBS Chr2 32642797 T-C Hetero INTERGENIC
SBS Chr2 35618866 C-A Hetero INTERGENIC
SBS Chr3 3306250 T-A Hetero INTRON
SBS Chr3 10512488 A-C Hetero INTRON
SBS Chr3 11778039 C-T Homo INTRON
SBS Chr3 15365804 T-A Homo INTERGENIC
SBS Chr3 24472322 G-A Hetero INTERGENIC
SBS Chr4 4154642 A-C Hetero INTERGENIC
SBS Chr4 6257082 C-T Hetero INTERGENIC
SBS Chr4 9386510 G-A Hetero UTR_3_PRIME
SBS Chr4 10750622 C-T Hetero INTERGENIC
SBS Chr4 20849127 G-A Hetero INTERGENIC
SBS Chr4 23801682 A-C Hetero SYNONYMOUS_CODING
SBS Chr4 24493313 G-A Hetero INTERGENIC
SBS Chr5 244902 G-T Hetero INTERGENIC
SBS Chr5 2169103 A-G Hetero INTERGENIC
SBS Chr5 6838991 G-A Hetero INTERGENIC
SBS Chr5 9401498 T-C Hetero INTERGENIC
SBS Chr5 9660739 C-A Homo INTERGENIC
SBS Chr5 15394367 G-A Hetero INTERGENIC
SBS Chr5 21826514 C-T Hetero INTERGENIC
SBS Chr5 27037007 A-T Hetero INTERGENIC
SBS Chr6 4517310 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g062300
SBS Chr6 8324691 G-A Hetero INTERGENIC
SBS Chr6 11444733 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 14137949 G-A Hetero INTRON
SBS Chr6 30736393 T-A Hetero INTERGENIC
SBS Chr6 30853855 C-T Hetero INTERGENIC
SBS Chr7 3105107 G-A Hetero INTERGENIC
SBS Chr7 3143991 C-T Homo INTERGENIC
SBS Chr7 8385530 T-G Homo INTERGENIC
SBS Chr7 10394216 T-G Hetero INTERGENIC
SBS Chr8 5455740 C-T Homo INTERGENIC
SBS Chr8 28536951 T-A Homo NON_SYNONYMOUS_CODING OsKitaake08g243000
SBS Chr9 16153619 C-T Hetero INTERGENIC
SBS Chr10 13215350 T-C Hetero INTERGENIC
SBS Chr10 15457882 G-A Homo INTERGENIC
SBS Chr10 17352985 T-C Homo INTERGENIC
SBS Chr10 19579485 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g144100
SBS Chr10 21386829 C-T Hetero INTERGENIC
SBS Chr11 4725915 G-T Hetero INTERGENIC
SBS Chr11 8652319 A-G Hetero UTR_3_PRIME
SBS Chr11 15440042 A-G Hetero INTERGENIC
SBS Chr11 21148606 G-A Homo INTERGENIC
SBS Chr11 23579114 A-C Homo INTERGENIC
SBS Chr11 25574075 T-C Homo INTERGENIC
SBS Chr11 27180268 T-A Homo INTERGENIC
SBS Chr11 29320142 A-G Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2186025 2186027 2
Deletion Chr10 2496654 2496655 1
Deletion Chr6 5223394 5223406 12
Deletion Chr2 5365207 5365213 6
Deletion Chr7 7069809 7069811 2
Deletion Chr4 8227378 8227391 13
Deletion Chr12 11807341 11807349 8
Deletion Chr7 12547001 12572000 24999 3
Deletion Chr7 12568956 12568957 1
Deletion Chr9 14054278 14054283 5
Deletion Chr1 14308976 14308993 17
Deletion Chr2 15582909 15582913 4
Deletion Chr5 15985001 16242000 256999 16
Deletion Chr10 17868974 17868983 9 OsKitaake10g124200
Deletion Chr1 19170721 19170723 2
Deletion Chr9 21110796 21110799 3
Deletion Chr2 22434295 22434296 1 OsKitaake02g217200
Deletion Chr10 22521662 22521664 2 OsKitaake10g186000
Deletion Chr3 23938001 23976000 37999 OsKitaake03g256700
Deletion Chr11 25504979 25504980 1
Deletion Chr5 25818530 25818533 3
Deletion Chr8 28537243 28537244 1 OsKitaake08g243000
Deletion Chr4 29463945 29463946 1
Deletion Chr4 33192033 33192034 1
Deletion Chr3 35601978 35601984 6 OsKitaake03g390700

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4457562 4457565 2
Insertion Chr2 30602361 30602365 3
Insertion Chr3 32383879 32383887 7
Insertion Chr3 36875107 36875114 6
Insertion Chr4 30509641 30509644 2
Insertion Chr5 27239372 27239375 2
Insertion Chr10 17408850 17408853 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 14975447 15949552
Inversion Chr5 15941322 15942235
Inversion Chr5 15942237 16241726
Inversion Chr7 20274913 20434527

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5687440 Chr3 24855962 2
Translocation Chr7 5687443 Chr3 24857797 OsKitaake07g069100
Translocation Chr5 15633811 Chr1 40185439
Translocation Chr6 16211945 Chr5 4943966
Translocation Chr11 17536419 Chr5 14975424
Translocation Chr11 17536441 Chr5 14974495

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6119454	G-T	Hetero	INTERGENIC
SBS	Chr1	8120984	C-T	Hetero	INTERGENIC
SBS	Chr1	11817740	G-C	Hetero	INTRON
SBS	Chr1	11945350	C-A	Hetero	INTERGENIC
SBS	Chr1	29991584	C-T	Hetero	INTERGENIC
SBS	Chr1	37579933	C-A	Hetero	INTERGENIC
SBS	Chr1	40192831	A-T	Hetero	INTERGENIC
SBS	Chr2	3269601	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	16984780	T-C	Hetero	INTERGENIC
SBS	Chr2	25087419	T-C	Hetero	INTERGENIC
SBS	Chr2	32642797	T-C	Hetero	INTERGENIC
SBS	Chr2	35618866	C-A	Hetero	INTERGENIC
SBS	Chr3	3306250	T-A	Hetero	INTRON
SBS	Chr3	10512488	A-C	Hetero	INTRON
SBS	Chr3	11778039	C-T	Homo	INTRON
SBS	Chr3	15365804	T-A	Homo	INTERGENIC
SBS	Chr3	24472322	G-A	Hetero	INTERGENIC
SBS	Chr4	4154642	A-C	Hetero	INTERGENIC
SBS	Chr4	6257082	C-T	Hetero	INTERGENIC
SBS	Chr4	9386510	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	10750622	C-T	Hetero	INTERGENIC
SBS	Chr4	20849127	G-A	Hetero	INTERGENIC
SBS	Chr4	23801682	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	24493313	G-A	Hetero	INTERGENIC
SBS	Chr5	244902	G-T	Hetero	INTERGENIC
SBS	Chr5	2169103	A-G	Hetero	INTERGENIC
SBS	Chr5	6838991	G-A	Hetero	INTERGENIC
SBS	Chr5	9401498	T-C	Hetero	INTERGENIC
SBS	Chr5	9660739	C-A	Homo	INTERGENIC
SBS	Chr5	15394367	G-A	Hetero	INTERGENIC
SBS	Chr5	21826514	C-T	Hetero	INTERGENIC
SBS	Chr5	27037007	A-T	Hetero	INTERGENIC
SBS	Chr6	4517310	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g062300
SBS	Chr6	8324691	G-A	Hetero	INTERGENIC
SBS	Chr6	11444733	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	14137949	G-A	Hetero	INTRON
SBS	Chr6	30736393	T-A	Hetero	INTERGENIC
SBS	Chr6	30853855	C-T	Hetero	INTERGENIC
SBS	Chr7	3105107	G-A	Hetero	INTERGENIC
SBS	Chr7	3143991	C-T	Homo	INTERGENIC
SBS	Chr7	8385530	T-G	Homo	INTERGENIC
SBS	Chr7	10394216	T-G	Hetero	INTERGENIC
SBS	Chr8	5455740	C-T	Homo	INTERGENIC
SBS	Chr8	28536951	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g243000
SBS	Chr9	16153619	C-T	Hetero	INTERGENIC
SBS	Chr10	13215350	T-C	Hetero	INTERGENIC
SBS	Chr10	15457882	G-A	Homo	INTERGENIC
SBS	Chr10	17352985	T-C	Homo	INTERGENIC
SBS	Chr10	19579485	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g144100
SBS	Chr10	21386829	C-T	Hetero	INTERGENIC
SBS	Chr11	4725915	G-T	Hetero	INTERGENIC
SBS	Chr11	8652319	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	15440042	A-G	Hetero	INTERGENIC
SBS	Chr11	21148606	G-A	Homo	INTERGENIC
SBS	Chr11	23579114	A-C	Homo	INTERGENIC
SBS	Chr11	25574075	T-C	Homo	INTERGENIC
SBS	Chr11	27180268	T-A	Homo	INTERGENIC
SBS	Chr11	29320142	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2186025	2186027	2
Deletion	Chr10	2496654	2496655	1
Deletion	Chr6	5223394	5223406	12
Deletion	Chr2	5365207	5365213	6
Deletion	Chr7	7069809	7069811	2
Deletion	Chr4	8227378	8227391	13
Deletion	Chr12	11807341	11807349	8
Deletion	Chr7	12547001	12572000	24999	3
Deletion	Chr7	12568956	12568957	1
Deletion	Chr9	14054278	14054283	5
Deletion	Chr1	14308976	14308993	17
Deletion	Chr2	15582909	15582913	4
Deletion	Chr5	15985001	16242000	256999	16
Deletion	Chr10	17868974	17868983	9	OsKitaake10g124200
Deletion	Chr1	19170721	19170723	2
Deletion	Chr9	21110796	21110799	3
Deletion	Chr2	22434295	22434296	1	OsKitaake02g217200
Deletion	Chr10	22521662	22521664	2	OsKitaake10g186000
Deletion	Chr3	23938001	23976000	37999	OsKitaake03g256700
Deletion	Chr11	25504979	25504980	1
Deletion	Chr5	25818530	25818533	3
Deletion	Chr8	28537243	28537244	1	OsKitaake08g243000
Deletion	Chr4	29463945	29463946	1
Deletion	Chr4	33192033	33192034	1
Deletion	Chr3	35601978	35601984	6	OsKitaake03g390700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	14975447	15949552
Inversion	Chr5	15941322	15942235
Inversion	Chr5	15942237	16241726
Inversion	Chr7	20274913	20434527

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes