Search Kitaake

Mutant Information

Mutant Name	FN2465 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2465 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1374288 A-T Hetero INTERGENIC
SBS Chr1 7077976 G-A Hetero INTERGENIC
SBS Chr1 21308768 C-T Hetero INTERGENIC
SBS Chr1 36672321 A-G Hetero INTERGENIC
SBS Chr2 5606630 G-C Hetero SPLICE_SITE_REGION
SBS Chr2 11963117 T-C Hetero INTERGENIC
SBS Chr2 12337376 A-G Hetero INTERGENIC
SBS Chr2 22210785 T-C Homo UTR_3_PRIME
SBS Chr2 26757499 G-A Homo INTRON
SBS Chr3 9366272 G-C Homo INTERGENIC
SBS Chr3 26409316 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g275500
SBS Chr3 35295745 G-A Hetero INTERGENIC
SBS Chr3 36605219 G-A Hetero INTERGENIC
SBS Chr4 2542007 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g015600
SBS Chr4 23101188 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 28638298 G-A Hetero INTERGENIC
SBS Chr4 33657586 C-T Hetero INTERGENIC
SBS Chr5 2269721 C-T Hetero INTERGENIC
SBS Chr5 11746694 G-A Hetero INTERGENIC
SBS Chr5 15907355 T-A Hetero INTRON
SBS Chr5 21992270 A-T Hetero SPLICE_SITE_REGION
SBS Chr6 5577946 A-G Hetero INTERGENIC
SBS Chr6 21087549 T-C Homo INTERGENIC
SBS Chr6 22393360 A-T Homo INTERGENIC
SBS Chr7 1725034 G-A Hetero INTERGENIC
SBS Chr7 3418167 G-T Hetero INTRON
SBS Chr7 7464911 G-A Hetero INTERGENIC
SBS Chr8 1633804 G-A Hetero INTRON
SBS Chr10 2186437 G-T Hetero INTRON
SBS Chr10 7732981 C-A Hetero INTERGENIC
SBS Chr10 8882161 A-C Hetero INTERGENIC
SBS Chr11 1452519 G-A Hetero SYNONYMOUS_STOP
SBS Chr11 6837556 C-A Hetero INTERGENIC
SBS Chr11 10434694 G-A Hetero INTERGENIC
SBS Chr11 11580952 T-A Hetero INTERGENIC
SBS Chr11 12104145 C-T Hetero INTERGENIC
SBS Chr11 13388854 C-A Hetero INTERGENIC
SBS Chr11 22427152 G-A Homo INTERGENIC
SBS Chr11 28994068 G-A Homo INTRON
SBS Chr11 29106224 G-A Homo INTERGENIC
SBS Chr12 7143509 A-C Hetero INTERGENIC
SBS Chr12 8211641 A-T Hetero INTERGENIC
SBS Chr12 22670906 A-T Hetero INTERGENIC
SBS Chr12 25127761 G-A Hetero INTERGENIC
SBS Chr12 25573362 A-T Hetero SYNONYMOUS_CODING
SBS Chr12 26182795 C-A Hetero INTERGENIC
SBS Chr12 26182796 T-A Hetero INTERGENIC

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1184795 1184796 1
Deletion Chr3 2236272 2236274 2
Deletion Chr4 2270787 2270792 5 OsKitaake04g014300
Deletion Chr12 3470827 3470829 2
Deletion Chr9 3648125 3648127 2
Deletion Chr6 5585460 5585481 21
Deletion Chr8 5989364 5989367 3
Deletion Chr2 6774039 6774043 4
Deletion Chr5 6940950 6940954 4
Deletion Chr10 7005954 7005959 5
Deletion Chr12 7041153 7041155 2
Deletion Chr11 7309001 7500000 190999 13
Deletion Chr11 10866112 10866119 7
Deletion Chr1 11735639 11735643 4
Deletion Chr5 11751561 11751566 5
Deletion Chr7 14125001 14146000 20999 OsKitaake07g122200
Deletion Chr10 15201864 15201865 1
Deletion Chr3 15372047 15372048 1
Deletion Chr4 16609136 16609139 3
Deletion Chr9 18409050 18409051 1
Deletion Chr3 18828934 18828936 2
Deletion Chr7 19673845 19673848 3 OsKitaake07g160500
Deletion Chr8 20127560 20127561 1
Deletion Chr2 20643464 20643466 2
Deletion Chr6 22393461 22393463 2
Deletion Chr4 25854206 25854223 17
Deletion Chr8 28112315 28112316 1
Deletion Chr5 28754074 28754093 19
Deletion Chr4 33402872 33402876 4
Deletion Chr1 34676949 34676950 1
Deletion Chr3 35110368 35110372 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 20706817 20706820 2
Insertion Chr3 29181563 29181566 2
Insertion Chr10 20709763 20709766 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 688075 Chr4 23488069 2
Translocation Chr11 688078 Chr4 23760963 2
Translocation Chr6 28515848 Chr4 34872603
Translocation Chr6 28515911 Chr4 34887098

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1374288	A-T	Hetero	INTERGENIC
SBS	Chr1	7077976	G-A	Hetero	INTERGENIC
SBS	Chr1	21308768	C-T	Hetero	INTERGENIC
SBS	Chr1	36672321	A-G	Hetero	INTERGENIC
SBS	Chr2	5606630	G-C	Hetero	SPLICE_SITE_REGION
SBS	Chr2	11963117	T-C	Hetero	INTERGENIC
SBS	Chr2	12337376	A-G	Hetero	INTERGENIC
SBS	Chr2	22210785	T-C	Homo	UTR_3_PRIME
SBS	Chr2	26757499	G-A	Homo	INTRON
SBS	Chr3	9366272	G-C	Homo	INTERGENIC
SBS	Chr3	26409316	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g275500
SBS	Chr3	35295745	G-A	Hetero	INTERGENIC
SBS	Chr3	36605219	G-A	Hetero	INTERGENIC
SBS	Chr4	2542007	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g015600
SBS	Chr4	23101188	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	28638298	G-A	Hetero	INTERGENIC
SBS	Chr4	33657586	C-T	Hetero	INTERGENIC
SBS	Chr5	2269721	C-T	Hetero	INTERGENIC
SBS	Chr5	11746694	G-A	Hetero	INTERGENIC
SBS	Chr5	15907355	T-A	Hetero	INTRON
SBS	Chr5	21992270	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr6	5577946	A-G	Hetero	INTERGENIC
SBS	Chr6	21087549	T-C	Homo	INTERGENIC
SBS	Chr6	22393360	A-T	Homo	INTERGENIC
SBS	Chr7	1725034	G-A	Hetero	INTERGENIC
SBS	Chr7	3418167	G-T	Hetero	INTRON
SBS	Chr7	7464911	G-A	Hetero	INTERGENIC
SBS	Chr8	1633804	G-A	Hetero	INTRON
SBS	Chr10	2186437	G-T	Hetero	INTRON
SBS	Chr10	7732981	C-A	Hetero	INTERGENIC
SBS	Chr10	8882161	A-C	Hetero	INTERGENIC
SBS	Chr11	1452519	G-A	Hetero	SYNONYMOUS_STOP
SBS	Chr11	6837556	C-A	Hetero	INTERGENIC
SBS	Chr11	10434694	G-A	Hetero	INTERGENIC
SBS	Chr11	11580952	T-A	Hetero	INTERGENIC
SBS	Chr11	12104145	C-T	Hetero	INTERGENIC
SBS	Chr11	13388854	C-A	Hetero	INTERGENIC
SBS	Chr11	22427152	G-A	Homo	INTERGENIC
SBS	Chr11	28994068	G-A	Homo	INTRON
SBS	Chr11	29106224	G-A	Homo	INTERGENIC
SBS	Chr12	7143509	A-C	Hetero	INTERGENIC
SBS	Chr12	8211641	A-T	Hetero	INTERGENIC
SBS	Chr12	22670906	A-T	Hetero	INTERGENIC
SBS	Chr12	25127761	G-A	Hetero	INTERGENIC
SBS	Chr12	25573362	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	26182795	C-A	Hetero	INTERGENIC
SBS	Chr12	26182796	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1184795	1184796	1
Deletion	Chr3	2236272	2236274	2
Deletion	Chr4	2270787	2270792	5	OsKitaake04g014300
Deletion	Chr12	3470827	3470829	2
Deletion	Chr9	3648125	3648127	2
Deletion	Chr6	5585460	5585481	21
Deletion	Chr8	5989364	5989367	3
Deletion	Chr2	6774039	6774043	4
Deletion	Chr5	6940950	6940954	4
Deletion	Chr10	7005954	7005959	5
Deletion	Chr12	7041153	7041155	2
Deletion	Chr11	7309001	7500000	190999	13
Deletion	Chr11	10866112	10866119	7
Deletion	Chr1	11735639	11735643	4
Deletion	Chr5	11751561	11751566	5
Deletion	Chr7	14125001	14146000	20999	OsKitaake07g122200
Deletion	Chr10	15201864	15201865	1
Deletion	Chr3	15372047	15372048	1
Deletion	Chr4	16609136	16609139	3
Deletion	Chr9	18409050	18409051	1
Deletion	Chr3	18828934	18828936	2
Deletion	Chr7	19673845	19673848	3	OsKitaake07g160500
Deletion	Chr8	20127560	20127561	1
Deletion	Chr2	20643464	20643466	2
Deletion	Chr6	22393461	22393463	2
Deletion	Chr4	25854206	25854223	17
Deletion	Chr8	28112315	28112316	1
Deletion	Chr5	28754074	28754093	19
Deletion	Chr4	33402872	33402876	4
Deletion	Chr1	34676949	34676950	1
Deletion	Chr3	35110368	35110372	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	688075	Chr4	23488069	2
Translocation	Chr11	688078	Chr4	23760963	2
Translocation	Chr6	28515848	Chr4	34872603
Translocation	Chr6	28515911	Chr4	34887098

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes