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Mutant Information

Mutant Name	FN2467 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2467 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16007720 C-A Hetero INTERGENIC
SBS Chr1 16601098 C-T Hetero INTERGENIC
SBS Chr1 17973716 A-G Hetero INTERGENIC
SBS Chr1 20359653 C-T Hetero INTERGENIC
SBS Chr1 25487332 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g247100
SBS Chr1 37311133 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g398000
SBS Chr1 40335754 C-T Hetero UTR_3_PRIME
SBS Chr2 9273402 C-G Hetero INTERGENIC
SBS Chr2 10498733 T-C Hetero INTERGENIC
SBS Chr2 16287953 A-G Hetero INTERGENIC
SBS Chr2 16287957 G-A Hetero INTERGENIC
SBS Chr2 26262286 C-T Homo INTERGENIC
SBS Chr2 34475186 G-T Hetero INTERGENIC
SBS Chr2 34899955 T-C Hetero INTERGENIC
SBS Chr2 34908059 A-C Hetero INTERGENIC
SBS Chr3 5529106 A-C Hetero INTRON
SBS Chr3 16894404 A-G Homo INTERGENIC
SBS Chr3 21494761 A-G Hetero INTERGENIC
SBS Chr3 28420790 G-T Hetero INTERGENIC
SBS Chr4 207372 T-C Homo INTERGENIC
SBS Chr4 8358016 G-A Hetero INTERGENIC
SBS Chr4 12509017 T-C Hetero INTERGENIC
SBS Chr4 36734201 A-T Hetero INTERGENIC
SBS Chr5 1955384 G-C Hetero INTERGENIC
SBS Chr5 11810891 T-C Hetero INTERGENIC
SBS Chr5 15586628 G-C Hetero INTERGENIC
SBS Chr5 16035799 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g122700
SBS Chr5 26356289 C-T Hetero INTRON
SBS Chr6 15502465 A-T Hetero INTRON
SBS Chr6 18446651 C-T Hetero INTERGENIC
SBS Chr6 26602549 C-T Hetero INTERGENIC
SBS Chr7 480401 G-A Hetero INTERGENIC
SBS Chr7 11374386 A-C Hetero INTERGENIC
SBS Chr7 13341023 G-A Hetero INTERGENIC
SBS Chr7 13894314 A-T Hetero INTERGENIC
SBS Chr7 22838911 G-A Hetero INTERGENIC
SBS Chr8 5887210 C-T Hetero INTERGENIC
SBS Chr8 7894416 C-T Hetero INTERGENIC
SBS Chr8 11891760 G-T Hetero INTERGENIC
SBS Chr9 9372906 C-T Homo INTERGENIC
SBS Chr9 14346556 C-T Hetero INTERGENIC
SBS Chr10 22590122 C-A Homo INTERGENIC
SBS Chr11 5302300 T-A Hetero INTRON
SBS Chr11 11204192 G-A Homo INTERGENIC
SBS Chr11 11457361 A-G Hetero INTERGENIC
SBS Chr11 27464583 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 27619140 G-A Hetero INTERGENIC
SBS Chr12 5503488 C-T Homo INTRON
SBS Chr12 6308968 C-G Hetero INTERGENIC
SBS Chr12 7901288 G-C Hetero INTERGENIC
SBS Chr12 16226814 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g123700
SBS Chr12 17348929 C-T Hetero INTERGENIC
SBS Chr12 24588381 A-C Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 840435 840437 2 OsKitaake12g011900
Deletion Chr10 1801707 1801708 1
Deletion Chr1 4953374 4953393 19
Deletion Chr8 5908001 6014000 105999 7
Deletion Chr2 8267236 8267239 3
Deletion Chr10 9356001 9389000 32999 OsKitaake10g054475
Deletion Chr11 9438149 9438153 4
Deletion Chr7 9489001 9598000 108999 9
Deletion Chr5 11733275 11733278 3
Deletion Chr4 17392214 17392220 6
Deletion Chr11 17487877 17487900 23 OsKitaake11g136900
Deletion Chr7 23407881 23407882 1
Deletion Chr7 27458001 27483000 24999 3
Deletion Chr3 30624668 30624710 42
Deletion Chr1 36231960 36231967 7
Deletion Chr1 36683075 36683077 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22820482 22820485 2
Insertion Chr2 7907584 7907587 2
Insertion Chr7 3416576 3416579 2
Insertion Chr8 6758453 6758457 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 9938882 10201499
Inversion Chr4 15921754 16669745
Inversion Chr6 26812167 27494796 OsKitaake06g248400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 15617983 Chr9 16257100 OsKitaake09g117300
Translocation Chr11 15620393 Chr9 16257104 2
Translocation Chr4 15921754 Chr1 9938874

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16007720	C-A	Hetero	INTERGENIC
SBS	Chr1	16601098	C-T	Hetero	INTERGENIC
SBS	Chr1	17973716	A-G	Hetero	INTERGENIC
SBS	Chr1	20359653	C-T	Hetero	INTERGENIC
SBS	Chr1	25487332	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g247100
SBS	Chr1	37311133	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g398000
SBS	Chr1	40335754	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	9273402	C-G	Hetero	INTERGENIC
SBS	Chr2	10498733	T-C	Hetero	INTERGENIC
SBS	Chr2	16287953	A-G	Hetero	INTERGENIC
SBS	Chr2	16287957	G-A	Hetero	INTERGENIC
SBS	Chr2	26262286	C-T	Homo	INTERGENIC
SBS	Chr2	34475186	G-T	Hetero	INTERGENIC
SBS	Chr2	34899955	T-C	Hetero	INTERGENIC
SBS	Chr2	34908059	A-C	Hetero	INTERGENIC
SBS	Chr3	5529106	A-C	Hetero	INTRON
SBS	Chr3	16894404	A-G	Homo	INTERGENIC
SBS	Chr3	21494761	A-G	Hetero	INTERGENIC
SBS	Chr3	28420790	G-T	Hetero	INTERGENIC
SBS	Chr4	207372	T-C	Homo	INTERGENIC
SBS	Chr4	8358016	G-A	Hetero	INTERGENIC
SBS	Chr4	12509017	T-C	Hetero	INTERGENIC
SBS	Chr4	36734201	A-T	Hetero	INTERGENIC
SBS	Chr5	1955384	G-C	Hetero	INTERGENIC
SBS	Chr5	11810891	T-C	Hetero	INTERGENIC
SBS	Chr5	15586628	G-C	Hetero	INTERGENIC
SBS	Chr5	16035799	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g122700
SBS	Chr5	26356289	C-T	Hetero	INTRON
SBS	Chr6	15502465	A-T	Hetero	INTRON
SBS	Chr6	18446651	C-T	Hetero	INTERGENIC
SBS	Chr6	26602549	C-T	Hetero	INTERGENIC
SBS	Chr7	480401	G-A	Hetero	INTERGENIC
SBS	Chr7	11374386	A-C	Hetero	INTERGENIC
SBS	Chr7	13341023	G-A	Hetero	INTERGENIC
SBS	Chr7	13894314	A-T	Hetero	INTERGENIC
SBS	Chr7	22838911	G-A	Hetero	INTERGENIC
SBS	Chr8	5887210	C-T	Hetero	INTERGENIC
SBS	Chr8	7894416	C-T	Hetero	INTERGENIC
SBS	Chr8	11891760	G-T	Hetero	INTERGENIC
SBS	Chr9	9372906	C-T	Homo	INTERGENIC
SBS	Chr9	14346556	C-T	Hetero	INTERGENIC
SBS	Chr10	22590122	C-A	Homo	INTERGENIC
SBS	Chr11	5302300	T-A	Hetero	INTRON
SBS	Chr11	11204192	G-A	Homo	INTERGENIC
SBS	Chr11	11457361	A-G	Hetero	INTERGENIC
SBS	Chr11	27464583	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	27619140	G-A	Hetero	INTERGENIC
SBS	Chr12	5503488	C-T	Homo	INTRON
SBS	Chr12	6308968	C-G	Hetero	INTERGENIC
SBS	Chr12	7901288	G-C	Hetero	INTERGENIC
SBS	Chr12	16226814	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g123700
SBS	Chr12	17348929	C-T	Hetero	INTERGENIC
SBS	Chr12	24588381	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	840435	840437	2	OsKitaake12g011900
Deletion	Chr10	1801707	1801708	1
Deletion	Chr1	4953374	4953393	19
Deletion	Chr8	5908001	6014000	105999	7
Deletion	Chr2	8267236	8267239	3
Deletion	Chr10	9356001	9389000	32999	OsKitaake10g054475
Deletion	Chr11	9438149	9438153	4
Deletion	Chr7	9489001	9598000	108999	9
Deletion	Chr5	11733275	11733278	3
Deletion	Chr4	17392214	17392220	6
Deletion	Chr11	17487877	17487900	23	OsKitaake11g136900
Deletion	Chr7	23407881	23407882	1
Deletion	Chr7	27458001	27483000	24999	3
Deletion	Chr3	30624668	30624710	42
Deletion	Chr1	36231960	36231967	7
Deletion	Chr1	36683075	36683077	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	9938882	10201499
Inversion	Chr4	15921754	16669745
Inversion	Chr6	26812167	27494796	OsKitaake06g248400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes