Search Kitaake

Mutant Information

Mutant Name	FN2469 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2469 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr1 28896713 T-A Hetero SYNONYMOUS_CODING
SBS Chr1 29885314 G-T Homo INTERGENIC
SBS Chr1 36763032 C-T Homo INTERGENIC
SBS Chr2 9052417 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 18358102 G-T Hetero INTERGENIC
SBS Chr3 22705864 T-C Hetero INTERGENIC
SBS Chr3 23443158 C-T Hetero INTERGENIC
SBS Chr3 24097024 A-G Hetero INTERGENIC
SBS Chr3 26292293 C-T Homo INTERGENIC
SBS Chr3 26376322 A-G Homo INTERGENIC
SBS Chr4 15303275 A-T Hetero INTERGENIC
SBS Chr4 24616613 C-T Hetero INTERGENIC
SBS Chr6 10457624 G-A Hetero INTERGENIC
SBS Chr6 17419761 G-A Homo INTERGENIC
SBS Chr6 17779309 G-A Homo INTERGENIC
SBS Chr6 23975457 G-A Homo INTERGENIC
SBS Chr6 26060337 T-A Homo INTERGENIC
SBS Chr7 7444961 G-T Hetero INTERGENIC
SBS Chr7 7921977 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g087200
SBS Chr7 15068864 C-A Hetero INTERGENIC
SBS Chr7 18224357 T-C Hetero INTRON
SBS Chr8 4624974 A-G Hetero INTERGENIC
SBS Chr8 22622931 G-A Hetero INTRON
SBS Chr8 24798334 G-C Homo NON_SYNONYMOUS_CODING OsKitaake08g194000
SBS Chr8 28627825 C-T Hetero INTERGENIC
SBS Chr8 29298618 C-T Hetero INTERGENIC
SBS Chr9 2193405 T-C Homo INTERGENIC
SBS Chr9 8531136 C-G Hetero INTERGENIC
SBS Chr10 5639251 C-A Hetero INTRON
SBS Chr10 5639252 A-T Hetero INTRON
SBS Chr10 8888371 C-T Hetero INTERGENIC
SBS Chr10 9534458 G-T Hetero INTERGENIC
SBS Chr11 5136440 G-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 5135594 5135596 2
Deletion Chr1 5777623 5777642 19
Deletion Chr1 5793462 5793464 2
Deletion Chr4 9562291 9562295 4
Deletion Chr7 9962671 9962672 1
Deletion Chr10 10041011 10041013 2
Deletion Chr2 10064748 10064752 4
Deletion Chr8 12595961 12595966 5
Deletion Chr3 12676335 12676336 1
Deletion Chr11 14868912 14868915 3
Deletion Chr11 16327067 16327080 13
Deletion Chr11 18197001 18220000 22999 OsKitaake11g141900
Deletion Chr11 18242129 18242133 4
Deletion Chr3 18866001 18930000 63999 4
Deletion Chr3 22705653 22705664 11
Deletion Chr2 23908812 23908813 1
Deletion Chr4 28264527 28264529 2
Deletion Chr1 32867082 32867084 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 2128981 2128985 3
Insertion Chr8 13579751 13579753 1
Insertion Chr4 13238148 13238150 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 18335487 18866532 OsKitaake03g227100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr1	28896713	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	29885314	G-T	Homo	INTERGENIC
SBS	Chr1	36763032	C-T	Homo	INTERGENIC
SBS	Chr2	9052417	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	18358102	G-T	Hetero	INTERGENIC
SBS	Chr3	22705864	T-C	Hetero	INTERGENIC
SBS	Chr3	23443158	C-T	Hetero	INTERGENIC
SBS	Chr3	24097024	A-G	Hetero	INTERGENIC
SBS	Chr3	26292293	C-T	Homo	INTERGENIC
SBS	Chr3	26376322	A-G	Homo	INTERGENIC
SBS	Chr4	15303275	A-T	Hetero	INTERGENIC
SBS	Chr4	24616613	C-T	Hetero	INTERGENIC
SBS	Chr6	10457624	G-A	Hetero	INTERGENIC
SBS	Chr6	17419761	G-A	Homo	INTERGENIC
SBS	Chr6	17779309	G-A	Homo	INTERGENIC
SBS	Chr6	23975457	G-A	Homo	INTERGENIC
SBS	Chr6	26060337	T-A	Homo	INTERGENIC
SBS	Chr7	7444961	G-T	Hetero	INTERGENIC
SBS	Chr7	7921977	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g087200
SBS	Chr7	15068864	C-A	Hetero	INTERGENIC
SBS	Chr7	18224357	T-C	Hetero	INTRON
SBS	Chr8	4624974	A-G	Hetero	INTERGENIC
SBS	Chr8	22622931	G-A	Hetero	INTRON
SBS	Chr8	24798334	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g194000
SBS	Chr8	28627825	C-T	Hetero	INTERGENIC
SBS	Chr8	29298618	C-T	Hetero	INTERGENIC
SBS	Chr9	2193405	T-C	Homo	INTERGENIC
SBS	Chr9	8531136	C-G	Hetero	INTERGENIC
SBS	Chr10	5639251	C-A	Hetero	INTRON
SBS	Chr10	5639252	A-T	Hetero	INTRON
SBS	Chr10	8888371	C-T	Hetero	INTERGENIC
SBS	Chr10	9534458	G-T	Hetero	INTERGENIC
SBS	Chr11	5136440	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	5135594	5135596	2
Deletion	Chr1	5777623	5777642	19
Deletion	Chr1	5793462	5793464	2
Deletion	Chr4	9562291	9562295	4
Deletion	Chr7	9962671	9962672	1
Deletion	Chr10	10041011	10041013	2
Deletion	Chr2	10064748	10064752	4
Deletion	Chr8	12595961	12595966	5
Deletion	Chr3	12676335	12676336	1
Deletion	Chr11	14868912	14868915	3
Deletion	Chr11	16327067	16327080	13
Deletion	Chr11	18197001	18220000	22999	OsKitaake11g141900
Deletion	Chr11	18242129	18242133	4
Deletion	Chr3	18866001	18930000	63999	4
Deletion	Chr3	22705653	22705664	11
Deletion	Chr2	23908812	23908813	1
Deletion	Chr4	28264527	28264529	2
Deletion	Chr1	32867082	32867084	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18335487	18866532	OsKitaake03g227100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes