Search Kitaake

Mutant Information

Mutant Name	FN2470 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2470 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17497990 C-T Hetero INTERGENIC
SBS Chr1 17749748 G-A Homo INTRON
SBS Chr1 30723014 C-T Hetero INTERGENIC
SBS Chr1 33074689 A-C Hetero INTRON
SBS Chr1 36049664 C-T Hetero INTERGENIC
SBS Chr2 120502 G-A Hetero INTERGENIC
SBS Chr2 3746953 T-A Hetero INTERGENIC
SBS Chr2 10271529 G-A Hetero INTERGENIC
SBS Chr2 22608959 T-C Homo INTERGENIC
SBS Chr3 2904882 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g040700
SBS Chr3 3911415 C-G Hetero INTERGENIC
SBS Chr4 7017231 C-T Homo INTERGENIC
SBS Chr4 8081095 T-A Homo INTRON
SBS Chr4 11951166 C-T Homo INTERGENIC
SBS Chr4 23851840 G-A Hetero INTERGENIC
SBS Chr4 33365282 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g273700
SBS Chr5 878279 T-G Hetero SYNONYMOUS_CODING
SBS Chr5 13076560 A-G Hetero SYNONYMOUS_CODING
SBS Chr6 9296693 C-T Hetero INTERGENIC
SBS Chr6 15250398 T-C Hetero INTERGENIC
SBS Chr6 18035172 T-A Hetero INTERGENIC
SBS Chr6 21125098 G-A Hetero INTERGENIC
SBS Chr6 29581226 G-A Homo INTRON
SBS Chr7 3506616 C-T Hetero INTERGENIC
SBS Chr7 14865787 G-A Hetero INTERGENIC
SBS Chr7 17534879 G-A Hetero INTERGENIC
SBS Chr8 10056235 G-A Hetero INTERGENIC
SBS Chr8 18096649 G-C Hetero INTERGENIC
SBS Chr8 19186211 T-C Hetero INTERGENIC
SBS Chr8 27471660 A-T Hetero INTERGENIC
SBS Chr9 10511116 A-G Hetero INTERGENIC
SBS Chr10 7477874 C-T Homo INTERGENIC
SBS Chr10 10020023 A-G Homo INTERGENIC
SBS Chr10 21230102 G-T Hetero INTRON
SBS Chr11 636137 T-A Hetero INTERGENIC
SBS Chr11 6311051 G-A Hetero INTERGENIC
SBS Chr11 9807228 G-A Hetero INTERGENIC
SBS Chr11 22817119 C-G Hetero INTERGENIC
SBS Chr12 3876832 T-G Homo INTERGENIC
SBS Chr12 10260515 A-T Homo UTR_3_PRIME
SBS Chr12 13374051 C-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1093903 1093910 7
Deletion Chr10 2753443 2753447 4
Deletion Chr1 3011361 3011364 3
Deletion Chr4 12565534 12565555 21 OsKitaake04g060400
Deletion Chr10 13784379 13784380 1
Deletion Chr5 15424171 15424173 2 OsKitaake05g118300
Deletion Chr12 15645488 15645496 8 OsKitaake12g121100
Deletion Chr12 16147748 16147757 9
Deletion Chr12 19109001 19297000 187999 29
Deletion Chr2 22794421 22794432 11
Deletion Chr8 25350524 25350530 6
Deletion Chr2 26539398 26539411 13 OsKitaake02g265300
Deletion Chr6 30040812 30040835 23
Deletion Chr4 31842668 31842669 1 OsKitaake04g252500
Deletion Chr1 36202535 36202549 14
Deletion Chr1 39088342 39088344 2 OsKitaake01g419700

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7488299 7488302 2
Insertion Chr2 23146854 23146857 2
Insertion Chr6 5139503 5139507 3
Insertion Chr8 4333353 4333356 2
Insertion Chr11 17439839 17439842 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 3467896 3666994
Inversion Chr5 3467900 3666955

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17497990	C-T	Hetero	INTERGENIC
SBS	Chr1	17749748	G-A	Homo	INTRON
SBS	Chr1	30723014	C-T	Hetero	INTERGENIC
SBS	Chr1	33074689	A-C	Hetero	INTRON
SBS	Chr1	36049664	C-T	Hetero	INTERGENIC
SBS	Chr2	120502	G-A	Hetero	INTERGENIC
SBS	Chr2	3746953	T-A	Hetero	INTERGENIC
SBS	Chr2	10271529	G-A	Hetero	INTERGENIC
SBS	Chr2	22608959	T-C	Homo	INTERGENIC
SBS	Chr3	2904882	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g040700
SBS	Chr3	3911415	C-G	Hetero	INTERGENIC
SBS	Chr4	7017231	C-T	Homo	INTERGENIC
SBS	Chr4	8081095	T-A	Homo	INTRON
SBS	Chr4	11951166	C-T	Homo	INTERGENIC
SBS	Chr4	23851840	G-A	Hetero	INTERGENIC
SBS	Chr4	33365282	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g273700
SBS	Chr5	878279	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	13076560	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr6	9296693	C-T	Hetero	INTERGENIC
SBS	Chr6	15250398	T-C	Hetero	INTERGENIC
SBS	Chr6	18035172	T-A	Hetero	INTERGENIC
SBS	Chr6	21125098	G-A	Hetero	INTERGENIC
SBS	Chr6	29581226	G-A	Homo	INTRON
SBS	Chr7	3506616	C-T	Hetero	INTERGENIC
SBS	Chr7	14865787	G-A	Hetero	INTERGENIC
SBS	Chr7	17534879	G-A	Hetero	INTERGENIC
SBS	Chr8	10056235	G-A	Hetero	INTERGENIC
SBS	Chr8	18096649	G-C	Hetero	INTERGENIC
SBS	Chr8	19186211	T-C	Hetero	INTERGENIC
SBS	Chr8	27471660	A-T	Hetero	INTERGENIC
SBS	Chr9	10511116	A-G	Hetero	INTERGENIC
SBS	Chr10	7477874	C-T	Homo	INTERGENIC
SBS	Chr10	10020023	A-G	Homo	INTERGENIC
SBS	Chr10	21230102	G-T	Hetero	INTRON
SBS	Chr11	636137	T-A	Hetero	INTERGENIC
SBS	Chr11	6311051	G-A	Hetero	INTERGENIC
SBS	Chr11	9807228	G-A	Hetero	INTERGENIC
SBS	Chr11	22817119	C-G	Hetero	INTERGENIC
SBS	Chr12	3876832	T-G	Homo	INTERGENIC
SBS	Chr12	10260515	A-T	Homo	UTR_3_PRIME
SBS	Chr12	13374051	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1093903	1093910	7
Deletion	Chr10	2753443	2753447	4
Deletion	Chr1	3011361	3011364	3
Deletion	Chr4	12565534	12565555	21	OsKitaake04g060400
Deletion	Chr10	13784379	13784380	1
Deletion	Chr5	15424171	15424173	2	OsKitaake05g118300
Deletion	Chr12	15645488	15645496	8	OsKitaake12g121100
Deletion	Chr12	16147748	16147757	9
Deletion	Chr12	19109001	19297000	187999	29
Deletion	Chr2	22794421	22794432	11
Deletion	Chr8	25350524	25350530	6
Deletion	Chr2	26539398	26539411	13	OsKitaake02g265300
Deletion	Chr6	30040812	30040835	23
Deletion	Chr4	31842668	31842669	1	OsKitaake04g252500
Deletion	Chr1	36202535	36202549	14
Deletion	Chr1	39088342	39088344	2	OsKitaake01g419700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3467896	3666994
Inversion	Chr5	3467900	3666955

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes