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Mutant Information

Mutant Name	FN2471 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2471 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9687240 T-C Hetero INTERGENIC
SBS Chr1 22360575 A-G Hetero INTERGENIC
SBS Chr1 43487255 C-T Homo UTR_3_PRIME
SBS Chr3 9056062 G-A Hetero INTERGENIC
SBS Chr3 15924349 G-C Hetero INTERGENIC
SBS Chr3 15924350 C-A Hetero INTERGENIC
SBS Chr3 37762121 A-C Hetero INTRON
SBS Chr4 7723792 A-G Hetero INTERGENIC
SBS Chr4 8786389 A-T Hetero INTRON
SBS Chr4 11168966 T-C Hetero INTERGENIC
SBS Chr4 14088259 T-C Hetero INTERGENIC
SBS Chr4 17017893 T-C Hetero INTERGENIC
SBS Chr4 30151830 G-A Hetero INTERGENIC
SBS Chr4 35607731 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g303900
SBS Chr5 14944850 C-T Hetero INTERGENIC
SBS Chr6 11258466 C-T Homo UTR_5_PRIME
SBS Chr6 11805892 T-C Hetero INTERGENIC
SBS Chr6 20958956 A-T Homo INTERGENIC
SBS Chr6 23610052 G-A Hetero INTERGENIC
SBS Chr6 26272041 C-T Homo INTERGENIC
SBS Chr6 28826796 C-T Homo INTERGENIC
SBS Chr7 5491700 T-C Hetero INTERGENIC
SBS Chr7 9224076 A-T Hetero INTERGENIC
SBS Chr7 10052346 C-T Hetero INTERGENIC
SBS Chr7 10339703 A-T Hetero INTERGENIC
SBS Chr7 15605233 C-T Hetero INTRON
SBS Chr7 16681230 T-A Hetero INTERGENIC
SBS Chr7 16681231 G-T Hetero INTERGENIC
SBS Chr7 22276998 G-A Hetero UTR_3_PRIME
SBS Chr7 26453663 A-T Hetero INTERGENIC
SBS Chr8 1310674 G-A Hetero INTERGENIC
SBS Chr8 7946189 G-C Hetero INTERGENIC
SBS Chr8 11223975 A-T Homo INTERGENIC
SBS Chr8 12328546 G-C Hetero INTERGENIC
SBS Chr8 15069343 C-A Homo INTERGENIC
SBS Chr8 21664180 C-T Hetero INTERGENIC
SBS Chr9 4885821 G-A Hetero INTERGENIC
SBS Chr9 9516081 A-C Hetero INTERGENIC
SBS Chr9 10491057 T-C Hetero INTERGENIC
SBS Chr9 12518817 G-A Hetero INTERGENIC
SBS Chr11 12761413 C-G Hetero INTERGENIC
SBS Chr11 18094683 A-T Homo INTERGENIC
SBS Chr11 24590520 G-A Hetero INTERGENIC
SBS Chr12 8214935 A-G Hetero INTERGENIC
SBS Chr12 11195478 C-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2215390 2215397 7 OsKitaake10g017400
Deletion Chr3 2777801 2777819 18
Deletion Chr3 4337824 4337826 2
Deletion Chr5 4463062 4463067 5
Deletion Chr5 6265915 6265923 8
Deletion Chr8 7587437 7587444 7
Deletion Chr2 8827282 8827284 2
Deletion Chr7 10528486 10528491 5
Deletion Chr4 13553555 13553558 3
Deletion Chr11 16920432 16920433 1
Deletion Chr6 17824459 17824462 3
Deletion Chr7 19690630 19690635 5
Deletion Chr3 20053815 20053816 1
Deletion Chr1 25259744 25259750 6
Deletion Chr11 26787022 26787023 1
Deletion Chr12 26807582 26807590 8 OsKitaake12g223200
Deletion Chr11 28767680 28767684 4
Deletion Chr6 29294271 29294287 16
Deletion Chr1 31036737 31036739 2
Deletion Chr1 35160483 35160488 5 OsKitaake01g370900
Deletion Chr1 35694895 35694906 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 29431343 29431348 4
Insertion Chr4 8898522 8898524 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 22822572 23151766
Inversion Chr4 22822577 23151770

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 10756922 Chr1 2460387 OsKitaake01g031100
Translocation Chr8 13088967 Chr7 28426956
Translocation Chr8 13096403 Chr7 28426960

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9687240	T-C	Hetero	INTERGENIC
SBS	Chr1	22360575	A-G	Hetero	INTERGENIC
SBS	Chr1	43487255	C-T	Homo	UTR_3_PRIME
SBS	Chr3	9056062	G-A	Hetero	INTERGENIC
SBS	Chr3	15924349	G-C	Hetero	INTERGENIC
SBS	Chr3	15924350	C-A	Hetero	INTERGENIC
SBS	Chr3	37762121	A-C	Hetero	INTRON
SBS	Chr4	7723792	A-G	Hetero	INTERGENIC
SBS	Chr4	8786389	A-T	Hetero	INTRON
SBS	Chr4	11168966	T-C	Hetero	INTERGENIC
SBS	Chr4	14088259	T-C	Hetero	INTERGENIC
SBS	Chr4	17017893	T-C	Hetero	INTERGENIC
SBS	Chr4	30151830	G-A	Hetero	INTERGENIC
SBS	Chr4	35607731	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g303900
SBS	Chr5	14944850	C-T	Hetero	INTERGENIC
SBS	Chr6	11258466	C-T	Homo	UTR_5_PRIME
SBS	Chr6	11805892	T-C	Hetero	INTERGENIC
SBS	Chr6	20958956	A-T	Homo	INTERGENIC
SBS	Chr6	23610052	G-A	Hetero	INTERGENIC
SBS	Chr6	26272041	C-T	Homo	INTERGENIC
SBS	Chr6	28826796	C-T	Homo	INTERGENIC
SBS	Chr7	5491700	T-C	Hetero	INTERGENIC
SBS	Chr7	9224076	A-T	Hetero	INTERGENIC
SBS	Chr7	10052346	C-T	Hetero	INTERGENIC
SBS	Chr7	10339703	A-T	Hetero	INTERGENIC
SBS	Chr7	15605233	C-T	Hetero	INTRON
SBS	Chr7	16681230	T-A	Hetero	INTERGENIC
SBS	Chr7	16681231	G-T	Hetero	INTERGENIC
SBS	Chr7	22276998	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	26453663	A-T	Hetero	INTERGENIC
SBS	Chr8	1310674	G-A	Hetero	INTERGENIC
SBS	Chr8	7946189	G-C	Hetero	INTERGENIC
SBS	Chr8	11223975	A-T	Homo	INTERGENIC
SBS	Chr8	12328546	G-C	Hetero	INTERGENIC
SBS	Chr8	15069343	C-A	Homo	INTERGENIC
SBS	Chr8	21664180	C-T	Hetero	INTERGENIC
SBS	Chr9	4885821	G-A	Hetero	INTERGENIC
SBS	Chr9	9516081	A-C	Hetero	INTERGENIC
SBS	Chr9	10491057	T-C	Hetero	INTERGENIC
SBS	Chr9	12518817	G-A	Hetero	INTERGENIC
SBS	Chr11	12761413	C-G	Hetero	INTERGENIC
SBS	Chr11	18094683	A-T	Homo	INTERGENIC
SBS	Chr11	24590520	G-A	Hetero	INTERGENIC
SBS	Chr12	8214935	A-G	Hetero	INTERGENIC
SBS	Chr12	11195478	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2215390	2215397	7	OsKitaake10g017400
Deletion	Chr3	2777801	2777819	18
Deletion	Chr3	4337824	4337826	2
Deletion	Chr5	4463062	4463067	5
Deletion	Chr5	6265915	6265923	8
Deletion	Chr8	7587437	7587444	7
Deletion	Chr2	8827282	8827284	2
Deletion	Chr7	10528486	10528491	5
Deletion	Chr4	13553555	13553558	3
Deletion	Chr11	16920432	16920433	1
Deletion	Chr6	17824459	17824462	3
Deletion	Chr7	19690630	19690635	5
Deletion	Chr3	20053815	20053816	1
Deletion	Chr1	25259744	25259750	6
Deletion	Chr11	26787022	26787023	1
Deletion	Chr12	26807582	26807590	8	OsKitaake12g223200
Deletion	Chr11	28767680	28767684	4
Deletion	Chr6	29294271	29294287	16
Deletion	Chr1	31036737	31036739	2
Deletion	Chr1	35160483	35160488	5	OsKitaake01g370900
Deletion	Chr1	35694895	35694906	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	22822572	23151766
Inversion	Chr4	22822577	23151770

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes