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Mutant Information

Mutant Name	FN2472 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2472 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5612302 A-G Hetero INTERGENIC
SBS Chr1 22574005 C-T Hetero INTERGENIC
SBS Chr1 26738879 C-T Hetero INTERGENIC
SBS Chr2 14438934 C-T Hetero INTERGENIC
SBS Chr2 20033540 T-A Homo INTERGENIC
SBS Chr2 24881801 G-A Homo INTERGENIC
SBS Chr2 25057192 G-A Homo INTERGENIC
SBS Chr3 17705515 A-G Hetero INTERGENIC
SBS Chr3 17727447 A-C Hetero INTERGENIC
SBS Chr3 32310054 T-A Homo INTERGENIC
SBS Chr3 33631050 T-C Homo INTERGENIC
SBS Chr4 6423539 A-G Homo INTERGENIC
SBS Chr4 26927017 A-C Homo INTERGENIC
SBS Chr5 8398451 T-C Homo UTR_3_PRIME
SBS Chr5 8398457 T-A Homo UTR_3_PRIME
SBS Chr5 22268029 A-T Homo INTERGENIC
SBS Chr6 1146510 T-G Homo INTERGENIC
SBS Chr6 28923593 T-C Hetero INTERGENIC
SBS Chr6 30317135 C-T Hetero INTERGENIC
SBS Chr7 15492470 A-T Hetero INTERGENIC
SBS Chr7 22889556 A-T Hetero INTERGENIC
SBS Chr7 25822789 G-A Hetero INTERGENIC
SBS Chr7 29153209 C-T Hetero INTERGENIC
SBS Chr8 8128145 G-A Hetero INTERGENIC
SBS Chr8 8864723 T-C Hetero INTERGENIC
SBS Chr9 3647753 C-T Hetero INTERGENIC
SBS Chr9 5403358 G-A Hetero INTERGENIC
SBS Chr9 9243890 C-G Hetero INTERGENIC
SBS Chr10 1150007 C-T Hetero INTERGENIC
SBS Chr10 1326428 C-T Hetero INTERGENIC
SBS Chr10 4329987 G-A Homo INTERGENIC
SBS Chr10 12228709 A-T Homo INTERGENIC
SBS Chr10 16941560 C-T Hetero INTERGENIC
SBS Chr11 7892703 T-C Hetero INTERGENIC
SBS Chr11 23839338 T-A Homo INTERGENIC
SBS Chr11 26529530 G-A Hetero INTERGENIC
SBS Chr12 4372579 T-C Hetero INTERGENIC
SBS Chr12 14198111 C-T Hetero INTERGENIC
SBS Chr12 17483284 A-T Hetero INTERGENIC
SBS Chr12 24624209 A-G Hetero INTRON
SBS Chr12 26337684 A-T Homo INTERGENIC
SBS Chr12 26895452 G-A Hetero UTR_3_PRIME

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1173700 1173704 4
Deletion Chr11 6879260 6879264 4
Deletion Chr5 7792002 7792013 11
Deletion Chr12 8190283 8190286 3
Deletion Chr8 8671870 8671871 1
Deletion Chr11 13340523 13340529 6
Deletion Chr1 13564016 13564026 10
Deletion Chr5 15151476 15151480 4
Deletion Chr1 17166176 17166185 9
Deletion Chr5 18868261 18868272 11
Deletion Chr2 19061773 19061774 1
Deletion Chr12 23980033 23980034 1
Deletion Chr11 24699116 24699118 2
Deletion Chr3 26685591 26685596 5
Deletion Chr2 27795502 27795541 39
Deletion Chr3 29055040 29055043 3
Deletion Chr5 29287059 29287061 2
Deletion Chr3 32841815 32841821 6
Deletion Chr1 34060001 34140000 79999 15
Deletion Chr3 34328126 34328127 1
Deletion Chr1 37270648 37270652 4

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20017975 20017978 2
Insertion Chr2 19568029 19568032 2
Insertion Chr7 20694438 20694445 6
Insertion Chr8 8874162 8874165 2
Insertion Chr8 28478800 28478803 2
Insertion Chr10 2629919 2629922 2
Insertion Chr10 9691889 9691892 2
Insertion Chr12 18823179 18823182 2
Insertion Chr4 19681192 19681194 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 5474759 5960822 OsKitaake01g076200
Inversion Chr1 5474765 5960832 OsKitaake01g076200
Inversion Chr6 16261041 16574428
Inversion Chr6 16404825 16866856
Inversion Chr6 16576410 16576677

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5612302	A-G	Hetero	INTERGENIC
SBS	Chr1	22574005	C-T	Hetero	INTERGENIC
SBS	Chr1	26738879	C-T	Hetero	INTERGENIC
SBS	Chr2	14438934	C-T	Hetero	INTERGENIC
SBS	Chr2	20033540	T-A	Homo	INTERGENIC
SBS	Chr2	24881801	G-A	Homo	INTERGENIC
SBS	Chr2	25057192	G-A	Homo	INTERGENIC
SBS	Chr3	17705515	A-G	Hetero	INTERGENIC
SBS	Chr3	17727447	A-C	Hetero	INTERGENIC
SBS	Chr3	32310054	T-A	Homo	INTERGENIC
SBS	Chr3	33631050	T-C	Homo	INTERGENIC
SBS	Chr4	6423539	A-G	Homo	INTERGENIC
SBS	Chr4	26927017	A-C	Homo	INTERGENIC
SBS	Chr5	8398451	T-C	Homo	UTR_3_PRIME
SBS	Chr5	8398457	T-A	Homo	UTR_3_PRIME
SBS	Chr5	22268029	A-T	Homo	INTERGENIC
SBS	Chr6	1146510	T-G	Homo	INTERGENIC
SBS	Chr6	28923593	T-C	Hetero	INTERGENIC
SBS	Chr6	30317135	C-T	Hetero	INTERGENIC
SBS	Chr7	15492470	A-T	Hetero	INTERGENIC
SBS	Chr7	22889556	A-T	Hetero	INTERGENIC
SBS	Chr7	25822789	G-A	Hetero	INTERGENIC
SBS	Chr7	29153209	C-T	Hetero	INTERGENIC
SBS	Chr8	8128145	G-A	Hetero	INTERGENIC
SBS	Chr8	8864723	T-C	Hetero	INTERGENIC
SBS	Chr9	3647753	C-T	Hetero	INTERGENIC
SBS	Chr9	5403358	G-A	Hetero	INTERGENIC
SBS	Chr9	9243890	C-G	Hetero	INTERGENIC
SBS	Chr10	1150007	C-T	Hetero	INTERGENIC
SBS	Chr10	1326428	C-T	Hetero	INTERGENIC
SBS	Chr10	4329987	G-A	Homo	INTERGENIC
SBS	Chr10	12228709	A-T	Homo	INTERGENIC
SBS	Chr10	16941560	C-T	Hetero	INTERGENIC
SBS	Chr11	7892703	T-C	Hetero	INTERGENIC
SBS	Chr11	23839338	T-A	Homo	INTERGENIC
SBS	Chr11	26529530	G-A	Hetero	INTERGENIC
SBS	Chr12	4372579	T-C	Hetero	INTERGENIC
SBS	Chr12	14198111	C-T	Hetero	INTERGENIC
SBS	Chr12	17483284	A-T	Hetero	INTERGENIC
SBS	Chr12	24624209	A-G	Hetero	INTRON
SBS	Chr12	26337684	A-T	Homo	INTERGENIC
SBS	Chr12	26895452	G-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1173700	1173704	4
Deletion	Chr11	6879260	6879264	4
Deletion	Chr5	7792002	7792013	11
Deletion	Chr12	8190283	8190286	3
Deletion	Chr8	8671870	8671871	1
Deletion	Chr11	13340523	13340529	6
Deletion	Chr1	13564016	13564026	10
Deletion	Chr5	15151476	15151480	4
Deletion	Chr1	17166176	17166185	9
Deletion	Chr5	18868261	18868272	11
Deletion	Chr2	19061773	19061774	1
Deletion	Chr12	23980033	23980034	1
Deletion	Chr11	24699116	24699118	2
Deletion	Chr3	26685591	26685596	5
Deletion	Chr2	27795502	27795541	39
Deletion	Chr3	29055040	29055043	3
Deletion	Chr5	29287059	29287061	2
Deletion	Chr3	32841815	32841821	6
Deletion	Chr1	34060001	34140000	79999	15
Deletion	Chr3	34328126	34328127	1
Deletion	Chr1	37270648	37270652	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5474759	5960822	OsKitaake01g076200
Inversion	Chr1	5474765	5960832	OsKitaake01g076200
Inversion	Chr6	16261041	16574428
Inversion	Chr6	16404825	16866856
Inversion	Chr6	16576410	16576677

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes