Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2473 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2473 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 26889183 | T-A | Homo | INTRON | |
| SBS | Chr1 | 26889184 | C-T | Homo | INTRON | |
| SBS | Chr1 | 28926420 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 3389859 | T-A | Homo | INTRON | |
| SBS | Chr2 | 27392129 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 29698607 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 31126006 | G-T | Homo | INTRON | |
| SBS | Chr3 | 5175280 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g074000 |
| SBS | Chr3 | 27172567 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 28147618 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 5283054 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 8489718 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 20970154 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 20980014 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 27207946 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 2461571 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr5 | 11411476 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 12244475 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 13331048 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14855353 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 11835438 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 1009016 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6772903 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 20323369 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 21672523 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 21600383 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 26773408 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 809099 | T-G | Hetero | START_GAINED | |
| SBS | Chr10 | 2341658 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 10427179 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 12934959 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 15525862 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 20100171 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 17344317 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15931417 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18229186 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21873013 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 23792213 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 26826734 | C-A | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 2769144 | 2769154 | 10 | |
| Deletion | Chr1 | 4046398 | 4046402 | 4 | |
| Deletion | Chr2 | 5582751 | 5582775 | 24 | |
| Deletion | Chr4 | 5944739 | 5944749 | 10 | |
| Deletion | Chr8 | 6002673 | 6002675 | 2 | |
| Deletion | Chr6 | 6071125 | 6071139 | 14 | |
| Deletion | Chr12 | 6955605 | 6955610 | 5 | |
| Deletion | Chr3 | 9360234 | 9360238 | 4 | |
| Deletion | Chr8 | 9777469 | 9777474 | 5 | |
| Deletion | Chr4 | 10888117 | 10888139 | 22 | |
| Deletion | Chr2 | 17683457 | 17683462 | 5 | |
| Deletion | Chr5 | 18241131 | 18241138 | 7 | |
| Deletion | Chr10 | 19104090 | 19104093 | 3 | |
| Deletion | Chr7 | 21781979 | 21781980 | 1 | OsKitaake07g183100 |
| Deletion | Chr12 | 23902077 | 23902082 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 20317031 | 20317034 | 2 | |
| Insertion | Chr1 | 27872045 | 27872048 | 2 | |
| Insertion | Chr8 | 7807196 | 7807198 | 1 | |
| Insertion | Chr12 | 6895166 | 6895175 | 8 |