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Mutant Information

Mutant Name	FN2474 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2474 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3186648 G-A Hetero INTERGENIC
SBS Chr1 22539872 G-A Hetero INTERGENIC
SBS Chr1 29891808 C-A Hetero INTERGENIC
SBS Chr1 29891809 G-A Hetero INTERGENIC
SBS Chr1 38165798 G-A Homo INTERGENIC
SBS Chr2 14427939 A-G Hetero INTERGENIC
SBS Chr2 23520726 A-C Hetero INTRON
SBS Chr2 27422985 C-T Hetero INTERGENIC
SBS Chr2 31230975 C-T Hetero INTERGENIC
SBS Chr3 3726345 A-T Hetero INTERGENIC
SBS Chr3 12503090 T-A Hetero UTR_3_PRIME
SBS Chr3 12579193 A-G Hetero INTERGENIC
SBS Chr3 15526269 G-T Hetero UTR_3_PRIME
SBS Chr3 35957181 T-A Hetero INTERGENIC
SBS Chr4 39323 C-T Hetero INTERGENIC
SBS Chr4 16442894 G-A Hetero INTERGENIC
SBS Chr4 24077611 A-G Hetero INTERGENIC
SBS Chr5 10771197 A-G Hetero INTERGENIC
SBS Chr6 11296447 G-A Homo INTERGENIC
SBS Chr7 2815036 T-A Hetero INTERGENIC
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 13656489 G-C Hetero INTERGENIC
SBS Chr7 19744193 C-T Hetero INTERGENIC
SBS Chr7 21466022 C-T Hetero INTERGENIC
SBS Chr7 21507618 C-A Hetero INTERGENIC
SBS Chr7 28688975 G-T Hetero INTERGENIC
SBS Chr8 6251696 G-A Hetero INTERGENIC
SBS Chr8 8553752 T-A Hetero INTERGENIC
SBS Chr8 8643405 T-C Hetero INTERGENIC
SBS Chr8 15093754 G-A Hetero INTERGENIC
SBS Chr9 9849942 T-C Hetero INTERGENIC
SBS Chr9 18015919 G-A Hetero INTERGENIC
SBS Chr10 14721788 A-G Homo INTERGENIC
SBS Chr11 12801773 T-C Hetero INTERGENIC
SBS Chr11 13034951 T-C Hetero INTERGENIC
SBS Chr11 19228769 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 20609695 A-G Hetero INTERGENIC
SBS Chr12 25409956 A-T Homo UTR_3_PRIME

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 913686 913687 1
Deletion Chr7 1803415 1803416 1 OsKitaake07g025200
Deletion Chr10 6763758 6763760 2
Deletion Chr12 21630218 21630221 3
Deletion Chr8 24857551 24857552 1
Deletion Chr5 29437822 29437826 4 OsKitaake05g279600
Deletion Chr4 29560399 29560400 1 OsKitaake04g226600
Deletion Chr1 30620739 30620746 7
Deletion Chr3 35691687 35691689 2
Deletion Chr1 42605740 42605745 5

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8493493 8493496 2
Insertion Chr2 36073796 36073799 2
Insertion Chr4 1441486 1441489 2
Insertion Chr6 20896818 20896821 2
Insertion Chr7 28630211 28630214 2
Insertion Chr10 1650766 1650769 2
Insertion Chr12 9072331 9072334 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 17389630 17451424
Inversion Chr1 29883150 30073344

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 17451426 Chr1 30073356

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3186648	G-A	Hetero	INTERGENIC
SBS	Chr1	22539872	G-A	Hetero	INTERGENIC
SBS	Chr1	29891808	C-A	Hetero	INTERGENIC
SBS	Chr1	29891809	G-A	Hetero	INTERGENIC
SBS	Chr1	38165798	G-A	Homo	INTERGENIC
SBS	Chr2	14427939	A-G	Hetero	INTERGENIC
SBS	Chr2	23520726	A-C	Hetero	INTRON
SBS	Chr2	27422985	C-T	Hetero	INTERGENIC
SBS	Chr2	31230975	C-T	Hetero	INTERGENIC
SBS	Chr3	3726345	A-T	Hetero	INTERGENIC
SBS	Chr3	12503090	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	12579193	A-G	Hetero	INTERGENIC
SBS	Chr3	15526269	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	35957181	T-A	Hetero	INTERGENIC
SBS	Chr4	39323	C-T	Hetero	INTERGENIC
SBS	Chr4	16442894	G-A	Hetero	INTERGENIC
SBS	Chr4	24077611	A-G	Hetero	INTERGENIC
SBS	Chr5	10771197	A-G	Hetero	INTERGENIC
SBS	Chr6	11296447	G-A	Homo	INTERGENIC
SBS	Chr7	2815036	T-A	Hetero	INTERGENIC
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	13656489	G-C	Hetero	INTERGENIC
SBS	Chr7	19744193	C-T	Hetero	INTERGENIC
SBS	Chr7	21466022	C-T	Hetero	INTERGENIC
SBS	Chr7	21507618	C-A	Hetero	INTERGENIC
SBS	Chr7	28688975	G-T	Hetero	INTERGENIC
SBS	Chr8	6251696	G-A	Hetero	INTERGENIC
SBS	Chr8	8553752	T-A	Hetero	INTERGENIC
SBS	Chr8	8643405	T-C	Hetero	INTERGENIC
SBS	Chr8	15093754	G-A	Hetero	INTERGENIC
SBS	Chr9	9849942	T-C	Hetero	INTERGENIC
SBS	Chr9	18015919	G-A	Hetero	INTERGENIC
SBS	Chr10	14721788	A-G	Homo	INTERGENIC
SBS	Chr11	12801773	T-C	Hetero	INTERGENIC
SBS	Chr11	13034951	T-C	Hetero	INTERGENIC
SBS	Chr11	19228769	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	20609695	A-G	Hetero	INTERGENIC
SBS	Chr12	25409956	A-T	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	913686	913687	1
Deletion	Chr7	1803415	1803416	1	OsKitaake07g025200
Deletion	Chr10	6763758	6763760	2
Deletion	Chr12	21630218	21630221	3
Deletion	Chr8	24857551	24857552	1
Deletion	Chr5	29437822	29437826	4	OsKitaake05g279600
Deletion	Chr4	29560399	29560400	1	OsKitaake04g226600
Deletion	Chr1	30620739	30620746	7
Deletion	Chr3	35691687	35691689	2
Deletion	Chr1	42605740	42605745	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	17389630	17451424
Inversion	Chr1	29883150	30073344

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes