Search Kitaake

Mutant Information

Mutant Name	FN2475 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2475 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8409593 T-G Hetero UTR_3_PRIME
SBS Chr1 9986778 T-A Hetero INTERGENIC
SBS Chr1 10141012 G-A Hetero INTERGENIC
SBS Chr1 10260820 A-T Hetero INTERGENIC
SBS Chr1 14262458 C-T Hetero INTERGENIC
SBS Chr1 14412217 G-A Hetero INTERGENIC
SBS Chr1 34883536 C-G Hetero INTERGENIC
SBS Chr1 41647209 T-A Hetero INTERGENIC
SBS Chr2 111033 G-A Hetero INTRON
SBS Chr2 24847200 A-G Hetero INTERGENIC
SBS Chr3 6679633 G-A Hetero INTERGENIC
SBS Chr3 10574927 G-T Hetero INTERGENIC
SBS Chr3 15193913 T-A Hetero INTERGENIC
SBS Chr3 15411502 T-C Hetero INTERGENIC
SBS Chr3 18048399 A-T Hetero INTERGENIC
SBS Chr3 20000877 G-A Hetero INTERGENIC
SBS Chr4 22616442 C-T Hetero INTERGENIC
SBS Chr4 26317242 G-A Homo INTERGENIC
SBS Chr4 30690827 T-G Hetero INTERGENIC
SBS Chr5 4639905 T-C Hetero INTERGENIC
SBS Chr5 14219610 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g109000
SBS Chr5 14310283 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 5883650 G-A Hetero INTERGENIC
SBS Chr6 12089976 T-C Homo INTERGENIC
SBS Chr7 5086462 C-T Homo INTERGENIC
SBS Chr7 19271897 A-G Hetero INTERGENIC
SBS Chr7 20947451 T-C Hetero UTR_3_PRIME
SBS Chr8 387073 A-G Hetero SYNONYMOUS_CODING
SBS Chr8 17607856 G-A Hetero INTERGENIC
SBS Chr8 22295720 A-C Homo INTERGENIC
SBS Chr8 22987154 T-C Hetero INTERGENIC
SBS Chr8 24718434 G-A Hetero INTERGENIC
SBS Chr9 16818415 G-A Homo INTERGENIC
SBS Chr9 18236227 A-T Homo INTRON
SBS Chr9 18236228 G-T Homo INTRON
SBS Chr9 18236229 A-T Homo INTRON
SBS Chr10 3933178 A-C Hetero INTERGENIC
SBS Chr10 7169071 G-A Hetero INTERGENIC
SBS Chr10 21766239 T-A Hetero INTERGENIC
SBS Chr11 3076548 G-A Homo INTERGENIC
SBS Chr11 6641761 T-A Homo INTRON
SBS Chr11 15784844 G-A Hetero INTERGENIC
SBS Chr11 16333932 T-G Hetero INTERGENIC
SBS Chr11 17011900 A-C Hetero INTERGENIC
SBS Chr11 20425284 C-A Hetero INTERGENIC
SBS Chr11 24539839 C-T Hetero INTERGENIC
SBS Chr11 25098302 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 985698 985700 2
Deletion Chr11 2993426 2993429 3
Deletion Chr2 8527507 8527523 16
Deletion Chr4 8533086 8533098 12
Deletion Chr11 9564265 9564266 1
Deletion Chr4 13493853 13493854 1
Deletion Chr4 20651275 20651277 2
Deletion Chr11 22908001 23012000 103999 14
Deletion Chr8 22996001 23090000 93999 5
Deletion Chr3 24243308 24243310 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 31401352 31401356 3
Insertion Chr5 15947216 15947219 2
Insertion Chr9 5255052 5255054 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 18980555 19409730 OsKitaake01g190700
Inversion Chr1 18980560 19409738 OsKitaake01g190700
Inversion Chr4 29695178 30513672
Inversion Chr4 29695184 30513681

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 19714998 Chr8 23104148 2
Translocation Chr9 19715022 Chr8 23087406 OsKitaake09g162000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8409593	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	9986778	T-A	Hetero	INTERGENIC
SBS	Chr1	10141012	G-A	Hetero	INTERGENIC
SBS	Chr1	10260820	A-T	Hetero	INTERGENIC
SBS	Chr1	14262458	C-T	Hetero	INTERGENIC
SBS	Chr1	14412217	G-A	Hetero	INTERGENIC
SBS	Chr1	34883536	C-G	Hetero	INTERGENIC
SBS	Chr1	41647209	T-A	Hetero	INTERGENIC
SBS	Chr2	111033	G-A	Hetero	INTRON
SBS	Chr2	24847200	A-G	Hetero	INTERGENIC
SBS	Chr3	6679633	G-A	Hetero	INTERGENIC
SBS	Chr3	10574927	G-T	Hetero	INTERGENIC
SBS	Chr3	15193913	T-A	Hetero	INTERGENIC
SBS	Chr3	15411502	T-C	Hetero	INTERGENIC
SBS	Chr3	18048399	A-T	Hetero	INTERGENIC
SBS	Chr3	20000877	G-A	Hetero	INTERGENIC
SBS	Chr4	22616442	C-T	Hetero	INTERGENIC
SBS	Chr4	26317242	G-A	Homo	INTERGENIC
SBS	Chr4	30690827	T-G	Hetero	INTERGENIC
SBS	Chr5	4639905	T-C	Hetero	INTERGENIC
SBS	Chr5	14219610	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g109000
SBS	Chr5	14310283	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	5883650	G-A	Hetero	INTERGENIC
SBS	Chr6	12089976	T-C	Homo	INTERGENIC
SBS	Chr7	5086462	C-T	Homo	INTERGENIC
SBS	Chr7	19271897	A-G	Hetero	INTERGENIC
SBS	Chr7	20947451	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	387073	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	17607856	G-A	Hetero	INTERGENIC
SBS	Chr8	22295720	A-C	Homo	INTERGENIC
SBS	Chr8	22987154	T-C	Hetero	INTERGENIC
SBS	Chr8	24718434	G-A	Hetero	INTERGENIC
SBS	Chr9	16818415	G-A	Homo	INTERGENIC
SBS	Chr9	18236227	A-T	Homo	INTRON
SBS	Chr9	18236228	G-T	Homo	INTRON
SBS	Chr9	18236229	A-T	Homo	INTRON
SBS	Chr10	3933178	A-C	Hetero	INTERGENIC
SBS	Chr10	7169071	G-A	Hetero	INTERGENIC
SBS	Chr10	21766239	T-A	Hetero	INTERGENIC
SBS	Chr11	3076548	G-A	Homo	INTERGENIC
SBS	Chr11	6641761	T-A	Homo	INTRON
SBS	Chr11	15784844	G-A	Hetero	INTERGENIC
SBS	Chr11	16333932	T-G	Hetero	INTERGENIC
SBS	Chr11	17011900	A-C	Hetero	INTERGENIC
SBS	Chr11	20425284	C-A	Hetero	INTERGENIC
SBS	Chr11	24539839	C-T	Hetero	INTERGENIC
SBS	Chr11	25098302	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	985698	985700	2
Deletion	Chr11	2993426	2993429	3
Deletion	Chr2	8527507	8527523	16
Deletion	Chr4	8533086	8533098	12
Deletion	Chr11	9564265	9564266	1
Deletion	Chr4	13493853	13493854	1
Deletion	Chr4	20651275	20651277	2
Deletion	Chr11	22908001	23012000	103999	14
Deletion	Chr8	22996001	23090000	93999	5
Deletion	Chr3	24243308	24243310	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18980555	19409730	OsKitaake01g190700
Inversion	Chr1	18980560	19409738	OsKitaake01g190700
Inversion	Chr4	29695178	30513672
Inversion	Chr4	29695184	30513681

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes