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Mutant Information

Mutant Name	FN2476 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2476 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15021243 T-A Homo INTRON
SBS Chr1 15116315 A-T Homo INTERGENIC
SBS Chr1 18901495 T-A Homo INTERGENIC
SBS Chr1 23210358 G-T Homo INTERGENIC
SBS Chr1 28807786 A-G Hetero INTERGENIC
SBS Chr1 30064294 G-A Hetero INTERGENIC
SBS Chr1 31843896 C-T Hetero INTERGENIC
SBS Chr1 37340957 T-G Hetero INTRON
SBS Chr1 43341938 G-T Hetero INTRON
SBS Chr3 4803288 T-C Hetero INTRON
SBS Chr3 24787883 C-T Hetero INTERGENIC
SBS Chr4 31844490 A-G Hetero INTERGENIC
SBS Chr5 4761329 G-A Hetero INTERGENIC
SBS Chr5 12579988 C-T Hetero INTERGENIC
SBS Chr5 14314037 G-A Hetero INTERGENIC
SBS Chr6 920041 T-C Homo INTERGENIC
SBS Chr6 27414773 G-T Hetero INTERGENIC
SBS Chr6 27414774 A-T Hetero INTERGENIC
SBS Chr7 15651945 G-A Hetero INTERGENIC
SBS Chr8 2148712 G-T Hetero INTERGENIC
SBS Chr8 2148715 T-A Hetero INTERGENIC
SBS Chr8 11535394 C-T Hetero INTERGENIC
SBS Chr8 21464003 C-T Hetero INTERGENIC
SBS Chr8 27682025 C-T Homo INTRON
SBS Chr9 4101950 C-T Homo INTRON
SBS Chr9 4352522 T-C Hetero INTERGENIC
SBS Chr9 10409247 G-A Hetero UTR_5_PRIME
SBS Chr10 13289795 G-A Homo INTERGENIC
SBS Chr11 861968 G-A Hetero INTERGENIC
SBS Chr11 1710833 G-A Hetero INTERGENIC
SBS Chr11 6385117 C-A Hetero INTERGENIC
SBS Chr11 9658748 G-A Hetero INTERGENIC
SBS Chr11 15244096 C-T Hetero INTERGENIC
SBS Chr12 4808683 C-T Homo INTERGENIC
SBS Chr12 5377038 G-A Homo INTERGENIC
SBS Chr12 5377039 T-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1244487 1244491 4
Deletion Chr10 1944436 1944437 1
Deletion Chr5 6793204 6793217 13
Deletion Chr4 6958033 6958034 1
Deletion Chr4 7758286 7758289 3
Deletion Chr4 10476116 10476118 2
Deletion Chr10 14497445 14497446 1
Deletion Chr9 14589343 14589345 2
Deletion Chr10 17443757 17443772 15
Deletion Chr4 24178020 24178040 20
Deletion Chr1 26197627 26197635 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6205447 6205455 7
Insertion Chr6 29366843 29366847 3
Insertion Chr8 3245576 3245579 2
Insertion Chr9 20216932 20216935 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15021243	T-A	Homo	INTRON
SBS	Chr1	15116315	A-T	Homo	INTERGENIC
SBS	Chr1	18901495	T-A	Homo	INTERGENIC
SBS	Chr1	23210358	G-T	Homo	INTERGENIC
SBS	Chr1	28807786	A-G	Hetero	INTERGENIC
SBS	Chr1	30064294	G-A	Hetero	INTERGENIC
SBS	Chr1	31843896	C-T	Hetero	INTERGENIC
SBS	Chr1	37340957	T-G	Hetero	INTRON
SBS	Chr1	43341938	G-T	Hetero	INTRON
SBS	Chr3	4803288	T-C	Hetero	INTRON
SBS	Chr3	24787883	C-T	Hetero	INTERGENIC
SBS	Chr4	31844490	A-G	Hetero	INTERGENIC
SBS	Chr5	4761329	G-A	Hetero	INTERGENIC
SBS	Chr5	12579988	C-T	Hetero	INTERGENIC
SBS	Chr5	14314037	G-A	Hetero	INTERGENIC
SBS	Chr6	920041	T-C	Homo	INTERGENIC
SBS	Chr6	27414773	G-T	Hetero	INTERGENIC
SBS	Chr6	27414774	A-T	Hetero	INTERGENIC
SBS	Chr7	15651945	G-A	Hetero	INTERGENIC
SBS	Chr8	2148712	G-T	Hetero	INTERGENIC
SBS	Chr8	2148715	T-A	Hetero	INTERGENIC
SBS	Chr8	11535394	C-T	Hetero	INTERGENIC
SBS	Chr8	21464003	C-T	Hetero	INTERGENIC
SBS	Chr8	27682025	C-T	Homo	INTRON
SBS	Chr9	4101950	C-T	Homo	INTRON
SBS	Chr9	4352522	T-C	Hetero	INTERGENIC
SBS	Chr9	10409247	G-A	Hetero	UTR_5_PRIME
SBS	Chr10	13289795	G-A	Homo	INTERGENIC
SBS	Chr11	861968	G-A	Hetero	INTERGENIC
SBS	Chr11	1710833	G-A	Hetero	INTERGENIC
SBS	Chr11	6385117	C-A	Hetero	INTERGENIC
SBS	Chr11	9658748	G-A	Hetero	INTERGENIC
SBS	Chr11	15244096	C-T	Hetero	INTERGENIC
SBS	Chr12	4808683	C-T	Homo	INTERGENIC
SBS	Chr12	5377038	G-A	Homo	INTERGENIC
SBS	Chr12	5377039	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1244487	1244491	4
Deletion	Chr10	1944436	1944437	1
Deletion	Chr5	6793204	6793217	13
Deletion	Chr4	6958033	6958034	1
Deletion	Chr4	7758286	7758289	3
Deletion	Chr4	10476116	10476118	2
Deletion	Chr10	14497445	14497446	1
Deletion	Chr9	14589343	14589345	2
Deletion	Chr10	17443757	17443772	15
Deletion	Chr4	24178020	24178040	20
Deletion	Chr1	26197627	26197635	8

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes