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| Mutant Information |
|---|
| Mutant Name | FN2478 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2478 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21903128 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 23030682 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 28890205 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29239438 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 22006666 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 30556447 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g312000 |
| SBS | Chr3 | 6044978 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 8846694 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 18664242 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 33111382 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 34372974 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g372900 |
| SBS | Chr4 | 7928604 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8677749 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 16303777 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 18656724 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 20035200 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 20764288 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 12124028 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12479084 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 22946231 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 30244433 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 13810412 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 20170961 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 18969296 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 11067010 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 20760419 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 21489938 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 22193517 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 19498060 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13771093 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14952558 | A-G | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 6659959 | 6659960 | 1 | |
| Deletion | Chr12 | 7147841 | 7147850 | 9 | |
| Deletion | Chr8 | 11903579 | 11903580 | 1 | |
| Deletion | Chr8 | 11979467 | 11979468 | 1 | |
| Deletion | Chr1 | 12362489 | 12362497 | 8 | |
| Deletion | Chr12 | 13490666 | 13490677 | 11 | OsKitaake12g111600 |
| Deletion | Chr12 | 15548859 | 15548891 | 32 | |
| Deletion | Chr12 | 16227793 | 16227804 | 11 | |
| Deletion | Chr10 | 21318386 | 21318395 | 9 | |
| Deletion | Chr6 | 22048408 | 22048409 | 1 | OsKitaake06g194200 |
| Deletion | Chr11 | 24466890 | 24466912 | 22 | |
| Deletion | Chr11 | 24553640 | 24553641 | 1 | |
| Deletion | Chr6 | 25346856 | 25346857 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 7481229 | 7481232 | 2 | |
| Insertion | Chr4 | 12299087 | 12299092 | 4 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 6025290 | 6050764 | OsKitaake03g086900 |
| Inversion | Chr3 | 6026512 | 6050768 | 2 |
| Inversion | Chr10 | 11518245 | 11537215 | |
| Inversion | Chr9 | 20482868 | 20718626 | |
| Inversion | Chr9 | 20482894 | 20718642 |