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Mutant Information

Mutant Name	FN2480 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2480 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6787960 C-T Hetero INTERGENIC
SBS Chr1 18445023 C-T Homo INTERGENIC
SBS Chr1 27415261 C-T Homo INTERGENIC
SBS Chr1 27415262 C-T Homo INTERGENIC
SBS Chr1 37755325 T-C Homo INTERGENIC
SBS Chr1 40025839 G-T Hetero INTRON
SBS Chr2 195138 T-G Hetero UTR_3_PRIME
SBS Chr2 3221515 C-T Hetero INTERGENIC
SBS Chr2 9348087 G-A Homo UTR_3_PRIME
SBS Chr2 9731428 T-C Hetero INTERGENIC
SBS Chr2 11029706 G-A Hetero UTR_5_PRIME
SBS Chr2 18712235 G-A Homo INTERGENIC
SBS Chr2 23006149 C-T Hetero INTERGENIC
SBS Chr2 29668979 T-A Hetero INTERGENIC
SBS Chr3 1797835 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g025600
SBS Chr3 7521069 A-T Hetero UTR_3_PRIME
SBS Chr3 29138032 G-A Homo INTERGENIC
SBS Chr4 17602004 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g088000
SBS Chr4 19476145 C-T Hetero INTERGENIC
SBS Chr4 26644577 G-T Hetero INTRON
SBS Chr4 32145655 T-A Homo INTERGENIC
SBS Chr4 32145656 C-A Homo INTERGENIC
SBS Chr5 8250711 G-A Hetero INTERGENIC
SBS Chr5 14561777 A-G Hetero INTRON
SBS Chr5 17338232 A-G Hetero INTRON
SBS Chr5 23693291 A-G Hetero INTERGENIC
SBS Chr5 29334671 C-T Hetero INTERGENIC
SBS Chr6 9062489 G-A Hetero INTERGENIC
SBS Chr6 9337780 A-G Hetero INTRON
SBS Chr7 227713 A-G Homo INTERGENIC
SBS Chr7 3396517 G-A Homo INTRON
SBS Chr7 17875849 G-A Hetero INTERGENIC
SBS Chr7 22446824 C-T Homo INTERGENIC
SBS Chr8 11010340 A-G Hetero INTERGENIC
SBS Chr8 16870885 G-C Hetero INTERGENIC
SBS Chr9 5975690 C-G Hetero INTERGENIC
SBS Chr9 14692051 G-A Homo INTERGENIC
SBS Chr9 22141500 C-A Hetero INTERGENIC
SBS Chr10 13166981 C-T Hetero INTERGENIC
SBS Chr10 24009488 T-A Hetero INTERGENIC
SBS Chr11 8746780 G-T Homo UTR_3_PRIME
SBS Chr12 3346756 G-A Hetero INTERGENIC
SBS Chr12 9019337 A-G Hetero INTRON
SBS Chr12 10931923 G-A Hetero INTERGENIC
SBS Chr12 14442361 A-G Hetero INTERGENIC
SBS Chr12 21548805 T-C Homo INTERGENIC
SBS Chr12 23971538 T-C Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1883937 1883941 4
Deletion Chr7 6606725 6606735 10
Deletion Chr4 6950541 6950547 6
Deletion Chr1 7862043 7862045 2
Deletion Chr10 10317845 10317852 7
Deletion Chr11 11317512 11317531 19
Deletion Chr1 15089113 15089122 9
Deletion Chr1 17528442 17528444 2
Deletion Chr1 19753001 19815000 61999 5
Deletion Chr3 21301402 21301414 12
Deletion Chr1 23685298 23685306 8
Deletion Chr1 24695980 24695990 10 OsKitaake01g238300
Deletion Chr7 28510332 28510350 18
Deletion Chr4 33465865 33465866 1
Deletion Chr4 35599971 35599972 1
Deletion Chr3 36954932 36954952 20

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 30079898 30079901 2
Insertion Chr7 2831121 2831124 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 23619468 24038219 OsKitaake10g202700

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 588778 Chr1 27506140 OsKitaake01g267500
Translocation Chr10 9661413 Chr1 19752981 OsKitaake01g196600
Translocation Chr10 9661755 Chr1 19814587
Translocation Chr12 18970764 Chr10 9660870 OsKitaake12g139800
Translocation Chr10 23619480 Chr1 27506955 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6787960	C-T	Hetero	INTERGENIC
SBS	Chr1	18445023	C-T	Homo	INTERGENIC
SBS	Chr1	27415261	C-T	Homo	INTERGENIC
SBS	Chr1	27415262	C-T	Homo	INTERGENIC
SBS	Chr1	37755325	T-C	Homo	INTERGENIC
SBS	Chr1	40025839	G-T	Hetero	INTRON
SBS	Chr2	195138	T-G	Hetero	UTR_3_PRIME
SBS	Chr2	3221515	C-T	Hetero	INTERGENIC
SBS	Chr2	9348087	G-A	Homo	UTR_3_PRIME
SBS	Chr2	9731428	T-C	Hetero	INTERGENIC
SBS	Chr2	11029706	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	18712235	G-A	Homo	INTERGENIC
SBS	Chr2	23006149	C-T	Hetero	INTERGENIC
SBS	Chr2	29668979	T-A	Hetero	INTERGENIC
SBS	Chr3	1797835	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g025600
SBS	Chr3	7521069	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	29138032	G-A	Homo	INTERGENIC
SBS	Chr4	17602004	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g088000
SBS	Chr4	19476145	C-T	Hetero	INTERGENIC
SBS	Chr4	26644577	G-T	Hetero	INTRON
SBS	Chr4	32145655	T-A	Homo	INTERGENIC
SBS	Chr4	32145656	C-A	Homo	INTERGENIC
SBS	Chr5	8250711	G-A	Hetero	INTERGENIC
SBS	Chr5	14561777	A-G	Hetero	INTRON
SBS	Chr5	17338232	A-G	Hetero	INTRON
SBS	Chr5	23693291	A-G	Hetero	INTERGENIC
SBS	Chr5	29334671	C-T	Hetero	INTERGENIC
SBS	Chr6	9062489	G-A	Hetero	INTERGENIC
SBS	Chr6	9337780	A-G	Hetero	INTRON
SBS	Chr7	227713	A-G	Homo	INTERGENIC
SBS	Chr7	3396517	G-A	Homo	INTRON
SBS	Chr7	17875849	G-A	Hetero	INTERGENIC
SBS	Chr7	22446824	C-T	Homo	INTERGENIC
SBS	Chr8	11010340	A-G	Hetero	INTERGENIC
SBS	Chr8	16870885	G-C	Hetero	INTERGENIC
SBS	Chr9	5975690	C-G	Hetero	INTERGENIC
SBS	Chr9	14692051	G-A	Homo	INTERGENIC
SBS	Chr9	22141500	C-A	Hetero	INTERGENIC
SBS	Chr10	13166981	C-T	Hetero	INTERGENIC
SBS	Chr10	24009488	T-A	Hetero	INTERGENIC
SBS	Chr11	8746780	G-T	Homo	UTR_3_PRIME
SBS	Chr12	3346756	G-A	Hetero	INTERGENIC
SBS	Chr12	9019337	A-G	Hetero	INTRON
SBS	Chr12	10931923	G-A	Hetero	INTERGENIC
SBS	Chr12	14442361	A-G	Hetero	INTERGENIC
SBS	Chr12	21548805	T-C	Homo	INTERGENIC
SBS	Chr12	23971538	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1883937	1883941	4
Deletion	Chr7	6606725	6606735	10
Deletion	Chr4	6950541	6950547	6
Deletion	Chr1	7862043	7862045	2
Deletion	Chr10	10317845	10317852	7
Deletion	Chr11	11317512	11317531	19
Deletion	Chr1	15089113	15089122	9
Deletion	Chr1	17528442	17528444	2
Deletion	Chr1	19753001	19815000	61999	5
Deletion	Chr3	21301402	21301414	12
Deletion	Chr1	23685298	23685306	8
Deletion	Chr1	24695980	24695990	10	OsKitaake01g238300
Deletion	Chr7	28510332	28510350	18
Deletion	Chr4	33465865	33465866	1
Deletion	Chr4	35599971	35599972	1
Deletion	Chr3	36954932	36954952	20

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	23619468	24038219	OsKitaake10g202700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes