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| Mutant Information |
|---|
| Mutant Name | FN2481 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2481 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2297821 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 5828742 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 8117383 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 15644336 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 41173703 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 12904816 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 19405859 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21878467 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 35821632 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 760725 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1267776 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11512597 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 17424934 | T-C | Homo | INTRON | |
| SBS | Chr4 | 20014911 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 22175420 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31553058 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g248400 |
| SBS | Chr5 | 17989336 | A-T | Homo | INTRON | |
| SBS | Chr8 | 3169353 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 16823434 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 6984886 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8607557 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 9169621 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12329914 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13810721 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 16773955 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 3325946 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 7320168 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14132796 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 24012970 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 17408982 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 25219818 | T-A | Hetero | INTRON |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 16790289 | 16790290 | 1 | |
| Deletion | Chr9 | 19659500 | 19659507 | 7 | |
| Deletion | Chr9 | 20280793 | 20280794 | 1 | |
| Deletion | Chr4 | 31553001 | 31567000 | 13999 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 7890656 | 7890659 | 2 | |
| Insertion | Chr4 | 9496147 | 9496149 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 7409854 | 7959611 | OsKitaake06g095950 |
| Inversion | Chr6 | 7409867 | 7959611 | OsKitaake06g095950 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 1086853 | Chr3 | 22024284 | OsKitaake11g013300 |
| Translocation | Chr11 | 1086868 | Chr3 | 22021217 | OsKitaake11g013300 |