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Mutant Information

Mutant Name	FN2482 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2482 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6641075 C-T Hetero INTERGENIC
SBS Chr1 13799277 T-C Hetero INTERGENIC
SBS Chr1 31776138 T-A Hetero INTERGENIC
SBS Chr2 17286151 A-G Hetero INTERGENIC
SBS Chr2 17623691 T-A Hetero INTERGENIC
SBS Chr2 26521810 A-T Hetero INTERGENIC
SBS Chr3 15095582 C-T Hetero INTERGENIC
SBS Chr3 31973781 G-A Homo INTRON
SBS Chr4 11270636 T-A Homo INTERGENIC
SBS Chr4 15830308 C-T Hetero INTERGENIC
SBS Chr4 15993560 G-T Hetero INTERGENIC
SBS Chr4 22858452 G-A Hetero INTERGENIC
SBS Chr4 27664609 G-A Hetero INTERGENIC
SBS Chr4 27952978 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 30910635 T-C Hetero INTERGENIC
SBS Chr5 4121269 C-T Hetero INTERGENIC
SBS Chr5 17874867 C-T Homo INTERGENIC
SBS Chr5 22437921 T-C Hetero INTERGENIC
SBS Chr6 8920838 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g107300
SBS Chr6 25969837 T-A Hetero INTRON
SBS Chr6 26077652 T-A Hetero INTERGENIC
SBS Chr6 28597091 G-A Hetero INTERGENIC
SBS Chr7 20137006 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g165400
SBS Chr7 26784430 G-T Hetero INTERGENIC
SBS Chr9 5005648 G-A Hetero INTERGENIC
SBS Chr9 9561929 A-C Hetero INTERGENIC
SBS Chr9 21698956 C-T Hetero INTRON
SBS Chr10 7905995 G-A Hetero INTERGENIC
SBS Chr10 21885063 C-T Hetero INTERGENIC
SBS Chr11 6822870 G-A Hetero INTERGENIC
SBS Chr11 13720863 C-T Homo INTERGENIC
SBS Chr11 14524724 A-G Homo INTERGENIC
SBS Chr11 20549744 T-C Homo INTERGENIC
SBS Chr11 24195047 G-A Homo INTERGENIC
SBS Chr11 24637200 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g199200
SBS Chr11 24637201 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g199200
SBS Chr12 12366504 C-T Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 7440001 7450000 9999
Deletion Chr5 10450123 10450125 2
Deletion Chr5 10608468 10608491 23
Deletion Chr7 16341081 16341083 2
Deletion Chr1 26588174 26588175 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 17291166 17291170 3

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 10288679 Chr1 23073009

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6641075	C-T	Hetero	INTERGENIC
SBS	Chr1	13799277	T-C	Hetero	INTERGENIC
SBS	Chr1	31776138	T-A	Hetero	INTERGENIC
SBS	Chr2	17286151	A-G	Hetero	INTERGENIC
SBS	Chr2	17623691	T-A	Hetero	INTERGENIC
SBS	Chr2	26521810	A-T	Hetero	INTERGENIC
SBS	Chr3	15095582	C-T	Hetero	INTERGENIC
SBS	Chr3	31973781	G-A	Homo	INTRON
SBS	Chr4	11270636	T-A	Homo	INTERGENIC
SBS	Chr4	15830308	C-T	Hetero	INTERGENIC
SBS	Chr4	15993560	G-T	Hetero	INTERGENIC
SBS	Chr4	22858452	G-A	Hetero	INTERGENIC
SBS	Chr4	27664609	G-A	Hetero	INTERGENIC
SBS	Chr4	27952978	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	30910635	T-C	Hetero	INTERGENIC
SBS	Chr5	4121269	C-T	Hetero	INTERGENIC
SBS	Chr5	17874867	C-T	Homo	INTERGENIC
SBS	Chr5	22437921	T-C	Hetero	INTERGENIC
SBS	Chr6	8920838	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g107300
SBS	Chr6	25969837	T-A	Hetero	INTRON
SBS	Chr6	26077652	T-A	Hetero	INTERGENIC
SBS	Chr6	28597091	G-A	Hetero	INTERGENIC
SBS	Chr7	20137006	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g165400
SBS	Chr7	26784430	G-T	Hetero	INTERGENIC
SBS	Chr9	5005648	G-A	Hetero	INTERGENIC
SBS	Chr9	9561929	A-C	Hetero	INTERGENIC
SBS	Chr9	21698956	C-T	Hetero	INTRON
SBS	Chr10	7905995	G-A	Hetero	INTERGENIC
SBS	Chr10	21885063	C-T	Hetero	INTERGENIC
SBS	Chr11	6822870	G-A	Hetero	INTERGENIC
SBS	Chr11	13720863	C-T	Homo	INTERGENIC
SBS	Chr11	14524724	A-G	Homo	INTERGENIC
SBS	Chr11	20549744	T-C	Homo	INTERGENIC
SBS	Chr11	24195047	G-A	Homo	INTERGENIC
SBS	Chr11	24637200	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g199200
SBS	Chr11	24637201	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g199200
SBS	Chr12	12366504	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	7440001	7450000	9999
Deletion	Chr5	10450123	10450125	2
Deletion	Chr5	10608468	10608491	23
Deletion	Chr7	16341081	16341083	2
Deletion	Chr1	26588174	26588175	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	10288679	Chr1	23073009

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes