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Mutant Information

Mutant Name	FN2483 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2483 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2127832 C-T Hetero INTERGENIC
SBS Chr1 3553494 C-T Homo INTRON
SBS Chr1 5865045 T-A Hetero INTRON
SBS Chr1 17453599 G-A Hetero INTERGENIC
SBS Chr1 34883703 G-A Hetero INTERGENIC
SBS Chr2 1765371 G-A Hetero INTERGENIC
SBS Chr2 6090717 A-G Homo INTERGENIC
SBS Chr2 15127318 G-A Hetero INTERGENIC
SBS Chr2 21248571 C-G Homo INTERGENIC
SBS Chr2 28396785 A-G Hetero INTERGENIC
SBS Chr2 30543664 T-C Hetero INTERGENIC
SBS Chr2 35401756 G-A Hetero INTERGENIC
SBS Chr3 752621 A-G Hetero INTRON
SBS Chr3 1134147 T-A Hetero INTRON
SBS Chr3 5304035 A-T Homo INTERGENIC
SBS Chr3 19171668 G-A Hetero INTERGENIC
SBS Chr4 10322307 G-A Homo INTERGENIC
SBS Chr4 18095024 G-T Homo INTERGENIC
SBS Chr4 22571914 G-A Hetero INTERGENIC
SBS Chr5 3579543 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g043300
SBS Chr5 13006366 A-G Hetero INTERGENIC
SBS Chr5 22835956 A-T Hetero INTERGENIC
SBS Chr6 7935197 C-A Hetero INTERGENIC
SBS Chr6 16189451 G-C Hetero INTERGENIC
SBS Chr6 16748976 A-T Hetero INTERGENIC
SBS Chr6 18776249 C-T Hetero INTRON
SBS Chr6 21792599 G-A Hetero START_LOST OsKitaake06g192000
SBS Chr6 22995128 A-T Hetero INTERGENIC
SBS Chr6 30238558 G-A Hetero INTERGENIC
SBS Chr6 31040389 C-T Hetero INTERGENIC
SBS Chr7 12715764 G-A Hetero INTERGENIC
SBS Chr7 14825934 C-T Hetero INTERGENIC
SBS Chr7 25659139 A-G Hetero INTRON
SBS Chr8 1902032 C-T Hetero INTRON
SBS Chr8 5257743 G-A Homo INTERGENIC
SBS Chr8 6952475 G-A Hetero INTERGENIC
SBS Chr8 8077756 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g073850
SBS Chr8 25520300 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g201200
SBS Chr8 28908567 G-A Homo INTERGENIC
SBS Chr9 3885797 T-A Hetero INTERGENIC
SBS Chr10 2335902 T-C Hetero INTERGENIC
SBS Chr10 4172737 A-C Hetero INTERGENIC
SBS Chr10 16484081 T-C Hetero INTERGENIC
SBS Chr10 17162417 A-T Hetero INTERGENIC
SBS Chr11 724400 G-T Hetero INTERGENIC
SBS Chr11 8454369 G-A Hetero INTERGENIC
SBS Chr11 11033089 C-T Hetero INTERGENIC
SBS Chr12 8349441 A-G Homo INTERGENIC
SBS Chr12 8897474 G-A Hetero INTERGENIC
SBS Chr12 16673122 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3947228 3947246 18
Deletion Chr2 5482882 5482884 2
Deletion Chr3 8079498 8079501 3
Deletion Chr2 8639944 8639945 1
Deletion Chr7 11481792 11481803 11
Deletion Chr7 16897191 16897193 2
Deletion Chr6 19355001 19694000 338999 25
Deletion Chr2 24848001 24878000 29999
Deletion Chr1 26560728 26560729 1
Deletion Chr5 27872446 27872452 6 OsKitaake05g255900
Deletion Chr8 28202694 28202704 10 OsKitaake08g237500
Deletion Chr3 31881135 31881140 5

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 1176374 1176377 2
Insertion Chr3 14158368 14158371 2
Insertion Chr8 650833 650837 3
Insertion Chr8 24269446 24269454 7
Insertion Chr11 25036464 25036470 5
Insertion Chr12 9910478 9910481 2
Insertion Chr8 22823116 22823118 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 32087048 32266785
Inversion Chr4 32087055 32266785

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 5275910 Chr2 19212448
Translocation Chr3 5275950 Chr2 19202743
Translocation Chr6 19356660 Chr2 24881721 OsKitaake06g174200
Translocation Chr3 27273402 Chr2 19203499
Translocation Chr2 31702855 Chr1 29518418 OsKitaake02g322500
Translocation Chr2 31702861 Chr1 27814669 OsKitaake02g322500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2127832	C-T	Hetero	INTERGENIC
SBS	Chr1	3553494	C-T	Homo	INTRON
SBS	Chr1	5865045	T-A	Hetero	INTRON
SBS	Chr1	17453599	G-A	Hetero	INTERGENIC
SBS	Chr1	34883703	G-A	Hetero	INTERGENIC
SBS	Chr2	1765371	G-A	Hetero	INTERGENIC
SBS	Chr2	6090717	A-G	Homo	INTERGENIC
SBS	Chr2	15127318	G-A	Hetero	INTERGENIC
SBS	Chr2	21248571	C-G	Homo	INTERGENIC
SBS	Chr2	28396785	A-G	Hetero	INTERGENIC
SBS	Chr2	30543664	T-C	Hetero	INTERGENIC
SBS	Chr2	35401756	G-A	Hetero	INTERGENIC
SBS	Chr3	752621	A-G	Hetero	INTRON
SBS	Chr3	1134147	T-A	Hetero	INTRON
SBS	Chr3	5304035	A-T	Homo	INTERGENIC
SBS	Chr3	19171668	G-A	Hetero	INTERGENIC
SBS	Chr4	10322307	G-A	Homo	INTERGENIC
SBS	Chr4	18095024	G-T	Homo	INTERGENIC
SBS	Chr4	22571914	G-A	Hetero	INTERGENIC
SBS	Chr5	3579543	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g043300
SBS	Chr5	13006366	A-G	Hetero	INTERGENIC
SBS	Chr5	22835956	A-T	Hetero	INTERGENIC
SBS	Chr6	7935197	C-A	Hetero	INTERGENIC
SBS	Chr6	16189451	G-C	Hetero	INTERGENIC
SBS	Chr6	16748976	A-T	Hetero	INTERGENIC
SBS	Chr6	18776249	C-T	Hetero	INTRON
SBS	Chr6	21792599	G-A	Hetero	START_LOST	OsKitaake06g192000
SBS	Chr6	22995128	A-T	Hetero	INTERGENIC
SBS	Chr6	30238558	G-A	Hetero	INTERGENIC
SBS	Chr6	31040389	C-T	Hetero	INTERGENIC
SBS	Chr7	12715764	G-A	Hetero	INTERGENIC
SBS	Chr7	14825934	C-T	Hetero	INTERGENIC
SBS	Chr7	25659139	A-G	Hetero	INTRON
SBS	Chr8	1902032	C-T	Hetero	INTRON
SBS	Chr8	5257743	G-A	Homo	INTERGENIC
SBS	Chr8	6952475	G-A	Hetero	INTERGENIC
SBS	Chr8	8077756	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g073850
SBS	Chr8	25520300	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g201200
SBS	Chr8	28908567	G-A	Homo	INTERGENIC
SBS	Chr9	3885797	T-A	Hetero	INTERGENIC
SBS	Chr10	2335902	T-C	Hetero	INTERGENIC
SBS	Chr10	4172737	A-C	Hetero	INTERGENIC
SBS	Chr10	16484081	T-C	Hetero	INTERGENIC
SBS	Chr10	17162417	A-T	Hetero	INTERGENIC
SBS	Chr11	724400	G-T	Hetero	INTERGENIC
SBS	Chr11	8454369	G-A	Hetero	INTERGENIC
SBS	Chr11	11033089	C-T	Hetero	INTERGENIC
SBS	Chr12	8349441	A-G	Homo	INTERGENIC
SBS	Chr12	8897474	G-A	Hetero	INTERGENIC
SBS	Chr12	16673122	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3947228	3947246	18
Deletion	Chr2	5482882	5482884	2
Deletion	Chr3	8079498	8079501	3
Deletion	Chr2	8639944	8639945	1
Deletion	Chr7	11481792	11481803	11
Deletion	Chr7	16897191	16897193	2
Deletion	Chr6	19355001	19694000	338999	25
Deletion	Chr2	24848001	24878000	29999
Deletion	Chr1	26560728	26560729	1
Deletion	Chr5	27872446	27872452	6	OsKitaake05g255900
Deletion	Chr8	28202694	28202704	10	OsKitaake08g237500
Deletion	Chr3	31881135	31881140	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	32087048	32266785
Inversion	Chr4	32087055	32266785

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes