Search Kitaake

Mutant Information

Mutant Name	FN2484 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2484 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5363825 G-A Hetero INTRON
SBS Chr1 17806048 C-G Homo INTERGENIC
SBS Chr1 37561382 G-T Hetero INTERGENIC
SBS Chr1 37561383 C-T Hetero INTERGENIC
SBS Chr2 19575816 T-A Homo INTERGENIC
SBS Chr2 33762462 G-A Hetero INTRON
SBS Chr3 6291093 G-A Homo UTR_3_PRIME
SBS Chr3 15806621 C-T Hetero INTERGENIC
SBS Chr4 30082839 G-A Hetero INTERGENIC
SBS Chr4 30837156 T-C Hetero INTRON
SBS Chr5 12314414 C-G Hetero INTERGENIC
SBS Chr5 14160740 C-T Hetero INTERGENIC
SBS Chr6 120894 G-C Homo INTERGENIC
SBS Chr6 4559088 C-T Hetero INTERGENIC
SBS Chr6 9791035 G-T Hetero INTERGENIC
SBS Chr6 19956841 A-C Hetero INTRON
SBS Chr6 25238582 C-A Hetero INTERGENIC
SBS Chr7 6438865 C-T Hetero INTERGENIC
SBS Chr7 13762178 T-A Hetero INTERGENIC
SBS Chr7 16825090 A-G Hetero INTRON
SBS Chr8 5039594 C-T Hetero INTERGENIC
SBS Chr8 7097096 A-T Hetero INTERGENIC
SBS Chr8 7400955 C-T Hetero INTERGENIC
SBS Chr8 15893628 C-T Hetero INTERGENIC
SBS Chr8 17093237 A-G Hetero INTERGENIC
SBS Chr8 25322048 C-A Hetero INTERGENIC
SBS Chr8 25688499 T-C Hetero INTERGENIC
SBS Chr8 25689741 A-T Hetero INTERGENIC
SBS Chr9 2712474 C-T Homo INTERGENIC
SBS Chr9 8655800 G-A Homo INTERGENIC
SBS Chr9 12035189 C-T Hetero INTERGENIC
SBS Chr9 16575791 T-A Hetero INTERGENIC
SBS Chr10 4686508 C-T Homo INTERGENIC
SBS Chr10 19239836 A-T Hetero SPLICE_SITE_ACCEPTOR OsKitaake10g139100
SBS Chr10 19896489 C-G Homo INTERGENIC
SBS Chr11 2665638 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g038100
SBS Chr11 4982849 A-G Hetero INTRON
SBS Chr11 20003597 T-A Hetero INTERGENIC
SBS Chr12 4855893 T-A Hetero INTERGENIC
SBS Chr12 5240145 G-A Hetero INTERGENIC
SBS Chr12 9483781 A-G Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1915001 1932000 16999 2
Deletion Chr10 4146503 4146504 1
Deletion Chr7 5173866 5173871 5
Deletion Chr12 5230804 5230807 3
Deletion Chr4 11596678 11596693 15
Deletion Chr12 11652227 11652538 311
Deletion Chr4 12076547 12076568 21
Deletion Chr4 13044551 13044553 2
Deletion Chr12 13478001 13604000 125999 6
Deletion Chr10 13548601 13548610 9
Deletion Chr10 16281001 16484000 202999 26
Deletion Chr10 16491001 16615000 123999 15
Deletion Chr11 17596466 17596478 12
Deletion Chr4 20495057 20495059 2
Deletion Chr12 21634675 21634681 6 OsKitaake12g169500
Deletion Chr1 27186214 27186215 1
Deletion Chr11 27790527 27790528 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 16978073 16978075 1
Insertion Chr3 9443505 9443508 2
Insertion Chr4 17263568 17263572 3
Insertion Chr5 16272089 16272093 3
Insertion Chr9 11566910 11566912 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 16339595 16878006
Inversion Chr5 16339621 16878017
Inversion Chr8 24765874 25240153 OsKitaake08g197200
Inversion Chr8 24765897 25240163 OsKitaake08g197200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 24775557 Chr3 30122552 OsKitaake07g220800
Translocation Chr7 24775586 Chr3 30121179 OsKitaake07g220800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5363825	G-A	Hetero	INTRON
SBS	Chr1	17806048	C-G	Homo	INTERGENIC
SBS	Chr1	37561382	G-T	Hetero	INTERGENIC
SBS	Chr1	37561383	C-T	Hetero	INTERGENIC
SBS	Chr2	19575816	T-A	Homo	INTERGENIC
SBS	Chr2	33762462	G-A	Hetero	INTRON
SBS	Chr3	6291093	G-A	Homo	UTR_3_PRIME
SBS	Chr3	15806621	C-T	Hetero	INTERGENIC
SBS	Chr4	30082839	G-A	Hetero	INTERGENIC
SBS	Chr4	30837156	T-C	Hetero	INTRON
SBS	Chr5	12314414	C-G	Hetero	INTERGENIC
SBS	Chr5	14160740	C-T	Hetero	INTERGENIC
SBS	Chr6	120894	G-C	Homo	INTERGENIC
SBS	Chr6	4559088	C-T	Hetero	INTERGENIC
SBS	Chr6	9791035	G-T	Hetero	INTERGENIC
SBS	Chr6	19956841	A-C	Hetero	INTRON
SBS	Chr6	25238582	C-A	Hetero	INTERGENIC
SBS	Chr7	6438865	C-T	Hetero	INTERGENIC
SBS	Chr7	13762178	T-A	Hetero	INTERGENIC
SBS	Chr7	16825090	A-G	Hetero	INTRON
SBS	Chr8	5039594	C-T	Hetero	INTERGENIC
SBS	Chr8	7097096	A-T	Hetero	INTERGENIC
SBS	Chr8	7400955	C-T	Hetero	INTERGENIC
SBS	Chr8	15893628	C-T	Hetero	INTERGENIC
SBS	Chr8	17093237	A-G	Hetero	INTERGENIC
SBS	Chr8	25322048	C-A	Hetero	INTERGENIC
SBS	Chr8	25688499	T-C	Hetero	INTERGENIC
SBS	Chr8	25689741	A-T	Hetero	INTERGENIC
SBS	Chr9	2712474	C-T	Homo	INTERGENIC
SBS	Chr9	8655800	G-A	Homo	INTERGENIC
SBS	Chr9	12035189	C-T	Hetero	INTERGENIC
SBS	Chr9	16575791	T-A	Hetero	INTERGENIC
SBS	Chr10	4686508	C-T	Homo	INTERGENIC
SBS	Chr10	19239836	A-T	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake10g139100
SBS	Chr10	19896489	C-G	Homo	INTERGENIC
SBS	Chr11	2665638	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g038100
SBS	Chr11	4982849	A-G	Hetero	INTRON
SBS	Chr11	20003597	T-A	Hetero	INTERGENIC
SBS	Chr12	4855893	T-A	Hetero	INTERGENIC
SBS	Chr12	5240145	G-A	Hetero	INTERGENIC
SBS	Chr12	9483781	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1915001	1932000	16999	2
Deletion	Chr10	4146503	4146504	1
Deletion	Chr7	5173866	5173871	5
Deletion	Chr12	5230804	5230807	3
Deletion	Chr4	11596678	11596693	15
Deletion	Chr12	11652227	11652538	311
Deletion	Chr4	12076547	12076568	21
Deletion	Chr4	13044551	13044553	2
Deletion	Chr12	13478001	13604000	125999	6
Deletion	Chr10	13548601	13548610	9
Deletion	Chr10	16281001	16484000	202999	26
Deletion	Chr10	16491001	16615000	123999	15
Deletion	Chr11	17596466	17596478	12
Deletion	Chr4	20495057	20495059	2
Deletion	Chr12	21634675	21634681	6	OsKitaake12g169500
Deletion	Chr1	27186214	27186215	1
Deletion	Chr11	27790527	27790528	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	16339595	16878006
Inversion	Chr5	16339621	16878017
Inversion	Chr8	24765874	25240153	OsKitaake08g197200
Inversion	Chr8	24765897	25240163	OsKitaake08g197200

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes