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Mutant Information

Mutant Name	FN2485 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2485 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3808203 A-G Hetero INTERGENIC
SBS Chr1 21626390 C-A Hetero INTERGENIC
SBS Chr1 28494143 G-C Hetero INTRON
SBS Chr1 30813243 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 30813244 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g305200
SBS Chr1 37164826 A-G Hetero INTERGENIC
SBS Chr1 39310618 G-A Hetero INTERGENIC
SBS Chr2 5708051 G-A Homo INTERGENIC
SBS Chr2 11649260 C-A Hetero INTERGENIC
SBS Chr2 27942193 T-A Homo INTRON
SBS Chr2 29525012 G-T Homo INTRON
SBS Chr2 31745351 C-T Homo INTERGENIC
SBS Chr3 3589917 A-C Homo NON_SYNONYMOUS_CODING OsKitaake03g050700
SBS Chr3 3589919 T-A Homo NON_SYNONYMOUS_CODING OsKitaake03g050700
SBS Chr3 12111593 G-A Homo INTERGENIC
SBS Chr3 20128030 T-A Homo INTERGENIC
SBS Chr3 26376370 T-A Hetero INTERGENIC
SBS Chr3 31539653 C-G Hetero INTERGENIC
SBS Chr4 2551740 A-G Hetero INTERGENIC
SBS Chr4 6948909 G-T Hetero INTERGENIC
SBS Chr4 14031531 T-G Hetero INTERGENIC
SBS Chr4 25428379 A-T Hetero INTERGENIC
SBS Chr4 27794427 C-T Hetero INTERGENIC
SBS Chr4 32894659 T-A Hetero INTERGENIC
SBS Chr5 11531138 G-A Homo INTERGENIC
SBS Chr5 12262796 G-A Homo INTERGENIC
SBS Chr5 19844873 T-C Homo INTERGENIC
SBS Chr5 21324840 C-A Hetero INTERGENIC
SBS Chr6 4919957 G-T Hetero INTERGENIC
SBS Chr6 9439692 A-G Hetero UTR_5_PRIME
SBS Chr6 13214124 C-T Hetero INTERGENIC
SBS Chr6 17063580 G-A Hetero INTERGENIC
SBS Chr6 17677762 T-A Hetero INTRON
SBS Chr6 30111923 G-A Hetero UTR_5_PRIME
SBS Chr7 3244582 G-A Hetero UTR_3_PRIME
SBS Chr7 12503194 C-T Hetero INTERGENIC
SBS Chr7 12503195 T-C Hetero INTERGENIC
SBS Chr7 12946788 T-C Hetero INTERGENIC
SBS Chr7 23832550 G-A Homo INTERGENIC
SBS Chr8 18521951 A-T Homo INTERGENIC
SBS Chr8 19160767 C-A Homo INTERGENIC
SBS Chr8 28217228 A-T Hetero INTERGENIC
SBS Chr9 2271736 C-T Homo INTERGENIC
SBS Chr9 6252694 C-T Homo INTERGENIC
SBS Chr9 8685269 G-T Hetero INTERGENIC
SBS Chr9 9354311 T-C Hetero INTERGENIC
SBS Chr9 10821568 C-T Hetero INTERGENIC
SBS Chr9 11918404 T-C Hetero INTRON
SBS Chr9 17400535 G-A Hetero INTERGENIC
SBS Chr9 20468340 T-A Hetero INTERGENIC
SBS Chr10 3464709 T-A Homo INTERGENIC
SBS Chr10 5646358 G-A Homo INTERGENIC
SBS Chr11 3812245 T-A Homo INTERGENIC
SBS Chr11 16998377 G-A Homo INTERGENIC
SBS Chr12 7644023 C-A Hetero INTERGENIC
SBS Chr12 17159404 T-C Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 719078 719084 6 OsKitaake04g005800
Deletion Chr7 2714001 2741000 26999 3
Deletion Chr10 2791001 2894000 102999 7
Deletion Chr6 4756819 4756823 4
Deletion Chr5 9079437 9079441 4
Deletion Chr5 10744720 10744721 1
Deletion Chr11 11489221 11489227 6
Deletion Chr9 12829809 12829810 1 OsKitaake09g084900
Deletion Chr7 13628001 13672000 43999
Deletion Chr12 16409001 16477000 67999 OsKitaake12g124600
Deletion Chr8 18521558 18521559 1
Deletion Chr5 19378073 19378074 1
Deletion Chr5 21874347 21874348 1
Deletion Chr12 22191306 22191308 2
Deletion Chr9 22673852 22673870 18 OsKitaake09g208400
Deletion Chr12 23002345 23002347 2
Deletion Chr2 27940799 27940807 8 OsKitaake02g281700
Deletion Chr2 28135541 28135553 12
Deletion Chr2 28348936 28348939 3 OsKitaake02g285300
Deletion Chr3 29347441 29347442 1 OsKitaake03g306000
Deletion Chr3 37525707 37525709 2
Deletion Chr1 38895708 38895709 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 4471064 4471067 2
Insertion Chr4 3220553 3220556 2
Insertion Chr9 14647933 14647936 2
Insertion Chr10 8005993 8006003 9

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3808203	A-G	Hetero	INTERGENIC
SBS	Chr1	21626390	C-A	Hetero	INTERGENIC
SBS	Chr1	28494143	G-C	Hetero	INTRON
SBS	Chr1	30813243	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	30813244	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g305200
SBS	Chr1	37164826	A-G	Hetero	INTERGENIC
SBS	Chr1	39310618	G-A	Hetero	INTERGENIC
SBS	Chr2	5708051	G-A	Homo	INTERGENIC
SBS	Chr2	11649260	C-A	Hetero	INTERGENIC
SBS	Chr2	27942193	T-A	Homo	INTRON
SBS	Chr2	29525012	G-T	Homo	INTRON
SBS	Chr2	31745351	C-T	Homo	INTERGENIC
SBS	Chr3	3589917	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g050700
SBS	Chr3	3589919	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g050700
SBS	Chr3	12111593	G-A	Homo	INTERGENIC
SBS	Chr3	20128030	T-A	Homo	INTERGENIC
SBS	Chr3	26376370	T-A	Hetero	INTERGENIC
SBS	Chr3	31539653	C-G	Hetero	INTERGENIC
SBS	Chr4	2551740	A-G	Hetero	INTERGENIC
SBS	Chr4	6948909	G-T	Hetero	INTERGENIC
SBS	Chr4	14031531	T-G	Hetero	INTERGENIC
SBS	Chr4	25428379	A-T	Hetero	INTERGENIC
SBS	Chr4	27794427	C-T	Hetero	INTERGENIC
SBS	Chr4	32894659	T-A	Hetero	INTERGENIC
SBS	Chr5	11531138	G-A	Homo	INTERGENIC
SBS	Chr5	12262796	G-A	Homo	INTERGENIC
SBS	Chr5	19844873	T-C	Homo	INTERGENIC
SBS	Chr5	21324840	C-A	Hetero	INTERGENIC
SBS	Chr6	4919957	G-T	Hetero	INTERGENIC
SBS	Chr6	9439692	A-G	Hetero	UTR_5_PRIME
SBS	Chr6	13214124	C-T	Hetero	INTERGENIC
SBS	Chr6	17063580	G-A	Hetero	INTERGENIC
SBS	Chr6	17677762	T-A	Hetero	INTRON
SBS	Chr6	30111923	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	3244582	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	12503194	C-T	Hetero	INTERGENIC
SBS	Chr7	12503195	T-C	Hetero	INTERGENIC
SBS	Chr7	12946788	T-C	Hetero	INTERGENIC
SBS	Chr7	23832550	G-A	Homo	INTERGENIC
SBS	Chr8	18521951	A-T	Homo	INTERGENIC
SBS	Chr8	19160767	C-A	Homo	INTERGENIC
SBS	Chr8	28217228	A-T	Hetero	INTERGENIC
SBS	Chr9	2271736	C-T	Homo	INTERGENIC
SBS	Chr9	6252694	C-T	Homo	INTERGENIC
SBS	Chr9	8685269	G-T	Hetero	INTERGENIC
SBS	Chr9	9354311	T-C	Hetero	INTERGENIC
SBS	Chr9	10821568	C-T	Hetero	INTERGENIC
SBS	Chr9	11918404	T-C	Hetero	INTRON
SBS	Chr9	17400535	G-A	Hetero	INTERGENIC
SBS	Chr9	20468340	T-A	Hetero	INTERGENIC
SBS	Chr10	3464709	T-A	Homo	INTERGENIC
SBS	Chr10	5646358	G-A	Homo	INTERGENIC
SBS	Chr11	3812245	T-A	Homo	INTERGENIC
SBS	Chr11	16998377	G-A	Homo	INTERGENIC
SBS	Chr12	7644023	C-A	Hetero	INTERGENIC
SBS	Chr12	17159404	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	719078	719084	6	OsKitaake04g005800
Deletion	Chr7	2714001	2741000	26999	3
Deletion	Chr10	2791001	2894000	102999	7
Deletion	Chr6	4756819	4756823	4
Deletion	Chr5	9079437	9079441	4
Deletion	Chr5	10744720	10744721	1
Deletion	Chr11	11489221	11489227	6
Deletion	Chr9	12829809	12829810	1	OsKitaake09g084900
Deletion	Chr7	13628001	13672000	43999
Deletion	Chr12	16409001	16477000	67999	OsKitaake12g124600
Deletion	Chr8	18521558	18521559	1
Deletion	Chr5	19378073	19378074	1
Deletion	Chr5	21874347	21874348	1
Deletion	Chr12	22191306	22191308	2
Deletion	Chr9	22673852	22673870	18	OsKitaake09g208400
Deletion	Chr12	23002345	23002347	2
Deletion	Chr2	27940799	27940807	8	OsKitaake02g281700
Deletion	Chr2	28135541	28135553	12
Deletion	Chr2	28348936	28348939	3	OsKitaake02g285300
Deletion	Chr3	29347441	29347442	1	OsKitaake03g306000
Deletion	Chr3	37525707	37525709	2
Deletion	Chr1	38895708	38895709	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes