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Mutant Information

Mutant Name	FN2486 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2486 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1898414 G-A Homo INTERGENIC
SBS Chr1 3264974 G-T Hetero INTERGENIC
SBS Chr1 8470896 C-A Homo UTR_5_PRIME
SBS Chr1 13882950 G-A Hetero INTERGENIC
SBS Chr1 16273895 G-C Hetero INTERGENIC
SBS Chr1 20427912 G-A Hetero INTERGENIC
SBS Chr1 22884977 G-A Hetero INTERGENIC
SBS Chr1 33642057 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g344800
SBS Chr1 36271516 T-C Hetero INTERGENIC
SBS Chr2 14760869 G-T Hetero INTERGENIC
SBS Chr2 29224968 T-C Hetero INTERGENIC
SBS Chr2 35919086 C-A Hetero INTERGENIC
SBS Chr3 10530101 T-G Hetero INTRON
SBS Chr3 10934598 T-C Hetero INTERGENIC
SBS Chr3 14832124 T-A Hetero INTERGENIC
SBS Chr3 14832125 T-A Hetero INTERGENIC
SBS Chr3 15634415 T-A Hetero INTERGENIC
SBS Chr3 22862811 C-A Hetero INTRON
SBS Chr3 24882243 C-T Hetero INTRON
SBS Chr3 31363117 T-C Homo INTERGENIC
SBS Chr4 605765 G-A Hetero INTERGENIC
SBS Chr4 16342303 G-A Homo INTERGENIC
SBS Chr4 30329368 A-C Hetero INTERGENIC
SBS Chr4 36746316 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g320200
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr6 4537850 C-T Hetero INTERGENIC
SBS Chr6 7100758 C-T Homo INTERGENIC
SBS Chr6 10463252 T-A Hetero INTERGENIC
SBS Chr6 14048099 G-T Hetero INTERGENIC
SBS Chr6 15457216 A-G Hetero INTERGENIC
SBS Chr7 23016271 A-T Hetero INTERGENIC
SBS Chr7 24701584 A-T Hetero INTERGENIC
SBS Chr7 25444217 G-A Hetero INTERGENIC
SBS Chr8 1013696 G-A Hetero INTERGENIC
SBS Chr8 3596586 A-T Hetero INTERGENIC
SBS Chr8 3596587 G-T Hetero INTERGENIC
SBS Chr8 3635741 C-T Hetero INTERGENIC
SBS Chr8 5234925 G-A Hetero INTERGENIC
SBS Chr8 12014653 C-T Hetero INTERGENIC
SBS Chr8 20782624 G-A Hetero INTERGENIC
SBS Chr8 21177783 C-T Hetero INTERGENIC
SBS Chr8 21573404 C-T Hetero INTERGENIC
SBS Chr9 3986787 G-A Homo SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Homo INTERGENIC
SBS Chr9 10823232 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g067101
SBS Chr9 13277798 G-A Homo INTRON
SBS Chr11 723288 C-T Homo INTERGENIC
SBS Chr12 14040195 C-G Hetero INTERGENIC
SBS Chr12 15076498 C-T Hetero INTERGENIC
SBS Chr12 17052245 G-T Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 246650 246652 2
Deletion Chr8 1837066 1837068 2
Deletion Chr4 1901341 1901371 30
Deletion Chr4 7296204 7296210 6
Deletion Chr7 7422331 7422333 2
Deletion Chr7 8301454 8301456 2
Deletion Chr10 9665240 9665251 11
Deletion Chr3 9829381 9829392 11
Deletion Chr1 10313712 10313719 7
Deletion Chr6 11863879 11863883 4
Deletion Chr8 14544919 14544921 2
Deletion Chr12 15062164 15062173 9
Deletion Chr3 15433696 15433697 1
Deletion Chr1 15929479 15929485 6
Deletion Chr1 17138962 17138963 1
Deletion Chr12 17634670 17634678 8 OsKitaake12g129800
Deletion Chr12 18392568 18392570 2
Deletion Chr7 19728001 19750000 21999
Deletion Chr8 23071023 23071030 7
Deletion Chr5 24640116 24640120 4 OsKitaake05g200600
Deletion Chr11 26482712 26482713 1
Deletion Chr7 27251421 27251422 1
Deletion Chr4 28849394 28849395 1 OsKitaake04g216600

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 22961958 22961963 4
Insertion Chr3 1726571 1726574 2
Insertion Chr3 14519147 14519150 2
Insertion Chr11 3763172 3763174 1
Insertion Chr11 19013479 19013482 2
Insertion Chr12 9199376 9199380 3

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 3538919 3767888
Inversion Chr7 3538926 3767891
Inversion Chr2 9990838 10043352 OsKitaake02g121000
Inversion Chr9 10478620 10770880
Inversion Chr3 22162147 22179282 OsKitaake03g241635
Inversion Chr3 22179277 22618005 2
Inversion Chr3 22545781 22639892
Inversion Chr3 22545787 22639925
Inversion Chr4 33853940 34656304 OsKitaake04g289400
Inversion Chr4 33853975 34656313 OsKitaake04g289400

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3449775 Chr9 8509415
Translocation Chr12 3449877 Chr9 10455338
Translocation Chr5 7943223 Chr2 24888865
Translocation Chr9 8834795 Chr4 34152575
Translocation Chr9 9014029 Chr4 34152571
Translocation Chr9 9064908 Chr7 13317713
Translocation Chr9 9065641 Chr7 13317745
Translocation Chr10 11970858 Chr6 2506974
Translocation Chr7 19729431 Chr2 24888093
Translocation Chr7 19747636 Chr5 7204815

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1898414	G-A	Homo	INTERGENIC
SBS	Chr1	3264974	G-T	Hetero	INTERGENIC
SBS	Chr1	8470896	C-A	Homo	UTR_5_PRIME
SBS	Chr1	13882950	G-A	Hetero	INTERGENIC
SBS	Chr1	16273895	G-C	Hetero	INTERGENIC
SBS	Chr1	20427912	G-A	Hetero	INTERGENIC
SBS	Chr1	22884977	G-A	Hetero	INTERGENIC
SBS	Chr1	33642057	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g344800
SBS	Chr1	36271516	T-C	Hetero	INTERGENIC
SBS	Chr2	14760869	G-T	Hetero	INTERGENIC
SBS	Chr2	29224968	T-C	Hetero	INTERGENIC
SBS	Chr2	35919086	C-A	Hetero	INTERGENIC
SBS	Chr3	10530101	T-G	Hetero	INTRON
SBS	Chr3	10934598	T-C	Hetero	INTERGENIC
SBS	Chr3	14832124	T-A	Hetero	INTERGENIC
SBS	Chr3	14832125	T-A	Hetero	INTERGENIC
SBS	Chr3	15634415	T-A	Hetero	INTERGENIC
SBS	Chr3	22862811	C-A	Hetero	INTRON
SBS	Chr3	24882243	C-T	Hetero	INTRON
SBS	Chr3	31363117	T-C	Homo	INTERGENIC
SBS	Chr4	605765	G-A	Hetero	INTERGENIC
SBS	Chr4	16342303	G-A	Homo	INTERGENIC
SBS	Chr4	30329368	A-C	Hetero	INTERGENIC
SBS	Chr4	36746316	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g320200
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr6	4537850	C-T	Hetero	INTERGENIC
SBS	Chr6	7100758	C-T	Homo	INTERGENIC
SBS	Chr6	10463252	T-A	Hetero	INTERGENIC
SBS	Chr6	14048099	G-T	Hetero	INTERGENIC
SBS	Chr6	15457216	A-G	Hetero	INTERGENIC
SBS	Chr7	23016271	A-T	Hetero	INTERGENIC
SBS	Chr7	24701584	A-T	Hetero	INTERGENIC
SBS	Chr7	25444217	G-A	Hetero	INTERGENIC
SBS	Chr8	1013696	G-A	Hetero	INTERGENIC
SBS	Chr8	3596586	A-T	Hetero	INTERGENIC
SBS	Chr8	3596587	G-T	Hetero	INTERGENIC
SBS	Chr8	3635741	C-T	Hetero	INTERGENIC
SBS	Chr8	5234925	G-A	Hetero	INTERGENIC
SBS	Chr8	12014653	C-T	Hetero	INTERGENIC
SBS	Chr8	20782624	G-A	Hetero	INTERGENIC
SBS	Chr8	21177783	C-T	Hetero	INTERGENIC
SBS	Chr8	21573404	C-T	Hetero	INTERGENIC
SBS	Chr9	3986787	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Homo	INTERGENIC
SBS	Chr9	10823232	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g067101
SBS	Chr9	13277798	G-A	Homo	INTRON
SBS	Chr11	723288	C-T	Homo	INTERGENIC
SBS	Chr12	14040195	C-G	Hetero	INTERGENIC
SBS	Chr12	15076498	C-T	Hetero	INTERGENIC
SBS	Chr12	17052245	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	246650	246652	2
Deletion	Chr8	1837066	1837068	2
Deletion	Chr4	1901341	1901371	30
Deletion	Chr4	7296204	7296210	6
Deletion	Chr7	7422331	7422333	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr10	9665240	9665251	11
Deletion	Chr3	9829381	9829392	11
Deletion	Chr1	10313712	10313719	7
Deletion	Chr6	11863879	11863883	4
Deletion	Chr8	14544919	14544921	2
Deletion	Chr12	15062164	15062173	9
Deletion	Chr3	15433696	15433697	1
Deletion	Chr1	15929479	15929485	6
Deletion	Chr1	17138962	17138963	1
Deletion	Chr12	17634670	17634678	8	OsKitaake12g129800
Deletion	Chr12	18392568	18392570	2
Deletion	Chr7	19728001	19750000	21999
Deletion	Chr8	23071023	23071030	7
Deletion	Chr5	24640116	24640120	4	OsKitaake05g200600
Deletion	Chr11	26482712	26482713	1
Deletion	Chr7	27251421	27251422	1
Deletion	Chr4	28849394	28849395	1	OsKitaake04g216600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3538919	3767888
Inversion	Chr7	3538926	3767891
Inversion	Chr2	9990838	10043352	OsKitaake02g121000
Inversion	Chr9	10478620	10770880
Inversion	Chr3	22162147	22179282	OsKitaake03g241635
Inversion	Chr3	22179277	22618005	2
Inversion	Chr3	22545781	22639892
Inversion	Chr3	22545787	22639925
Inversion	Chr4	33853940	34656304	OsKitaake04g289400
Inversion	Chr4	33853975	34656313	OsKitaake04g289400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes