Search Kitaake

Mutant Information

Mutant Name	FN2487 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2487 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1981403 G-A Hetero INTRON
SBS Chr1 6042015 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g077100
SBS Chr1 7181403 T-C Homo UTR_3_PRIME
SBS Chr1 7275058 G-C Homo INTERGENIC
SBS Chr1 21604835 G-A Hetero INTERGENIC
SBS Chr1 24224453 T-C Homo INTERGENIC
SBS Chr1 34173255 C-A Hetero INTERGENIC
SBS Chr1 37152962 T-G Hetero INTERGENIC
SBS Chr1 41554713 C-T Hetero INTRON
SBS Chr2 35835924 G-A Hetero INTRON
SBS Chr2 35842317 A-G Hetero UTR_3_PRIME
SBS Chr3 16448999 C-T Hetero INTERGENIC
SBS Chr3 36418605 A-T Hetero INTERGENIC
SBS Chr4 7460898 C-T Homo INTERGENIC
SBS Chr4 7478826 G-A Hetero INTERGENIC
SBS Chr4 14439400 G-C Hetero INTERGENIC
SBS Chr4 18205286 A-T Hetero INTERGENIC
SBS Chr4 31965173 C-T Hetero INTERGENIC
SBS Chr4 36389467 G-A Hetero UTR_3_PRIME
SBS Chr5 11603186 C-A Hetero INTERGENIC
SBS Chr5 12442103 T-G Hetero INTERGENIC
SBS Chr5 15253088 T-C Hetero INTERGENIC
SBS Chr5 22783229 C-T Hetero INTERGENIC
SBS Chr6 1229113 C-T Hetero INTERGENIC
SBS Chr6 22107401 C-G Hetero INTERGENIC
SBS Chr7 11028139 C-T Homo INTERGENIC
SBS Chr7 11600161 A-G Hetero UTR_3_PRIME
SBS Chr7 13016791 C-G Hetero INTERGENIC
SBS Chr8 6676928 A-T Hetero INTERGENIC
SBS Chr8 21170590 A-C Hetero INTERGENIC
SBS Chr8 26960325 C-T Homo INTERGENIC
SBS Chr9 8994404 G-A Hetero UTR_3_PRIME
SBS Chr9 14618283 G-C Hetero INTERGENIC
SBS Chr10 611337 C-T Hetero INTERGENIC
SBS Chr10 616169 C-T Hetero INTERGENIC
SBS Chr10 1063146 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 13960477 C-T Homo INTERGENIC
SBS Chr10 15228942 C-A Homo INTERGENIC
SBS Chr10 16588136 T-C Homo UTR_3_PRIME
SBS Chr11 3888276 C-A Hetero INTERGENIC
SBS Chr11 6205340 A-T Hetero INTERGENIC
SBS Chr11 8616762 A-G Hetero INTERGENIC
SBS Chr11 10157648 T-G Hetero INTERGENIC
SBS Chr11 10157649 C-T Hetero INTERGENIC
SBS Chr11 10157651 T-C Hetero INTERGENIC
SBS Chr11 13568315 G-A Hetero INTERGENIC
SBS Chr11 22029664 G-A Hetero INTERGENIC
SBS Chr11 29404895 G-A Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1385631 1385633 2
Deletion Chr8 3034784 3034785 1
Deletion Chr4 3443001 3691000 247999 8
Deletion Chr6 4383137 4383149 12
Deletion Chr4 7372988 7372990 2
Deletion Chr2 7808250 7808254 4
Deletion Chr8 9390051 9390053 2
Deletion Chr9 15420439 15420443 4
Deletion Chr7 18618636 18618637 1
Deletion Chr8 18711864 18711874 10 OsKitaake08g138500
Deletion Chr3 21349686 21349687 1
Deletion Chr7 22076260 22076263 3
Deletion Chr5 25176309 25176310 1
Deletion Chr5 26393880 26393886 6
Deletion Chr11 27988513 27988535 22
Deletion Chr8 28722008 28722015 7
Deletion Chr3 36894991 36894992 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3924524 3924532 7
Insertion Chr5 3485526 3485529 2
Insertion Chr9 17890578 17890582 3
Insertion Chr11 23529487 23529490 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 34181782 34867180
Inversion Chr1 34181786 34867235

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1172783 Chr7 22915302 OsKitaake07g197300
Translocation Chr10 1172791 Chr1 7233277 OsKitaake01g090700
Translocation Chr10 1174126 Chr1 7233281 OsKitaake01g090700
Translocation Chr10 1174133 Chr7 22916713 OsKitaake07g197300
Translocation Chr10 15777223 Chr6 6447414

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1981403	G-A	Hetero	INTRON
SBS	Chr1	6042015	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g077100
SBS	Chr1	7181403	T-C	Homo	UTR_3_PRIME
SBS	Chr1	7275058	G-C	Homo	INTERGENIC
SBS	Chr1	21604835	G-A	Hetero	INTERGENIC
SBS	Chr1	24224453	T-C	Homo	INTERGENIC
SBS	Chr1	34173255	C-A	Hetero	INTERGENIC
SBS	Chr1	37152962	T-G	Hetero	INTERGENIC
SBS	Chr1	41554713	C-T	Hetero	INTRON
SBS	Chr2	35835924	G-A	Hetero	INTRON
SBS	Chr2	35842317	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	16448999	C-T	Hetero	INTERGENIC
SBS	Chr3	36418605	A-T	Hetero	INTERGENIC
SBS	Chr4	7460898	C-T	Homo	INTERGENIC
SBS	Chr4	7478826	G-A	Hetero	INTERGENIC
SBS	Chr4	14439400	G-C	Hetero	INTERGENIC
SBS	Chr4	18205286	A-T	Hetero	INTERGENIC
SBS	Chr4	31965173	C-T	Hetero	INTERGENIC
SBS	Chr4	36389467	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	11603186	C-A	Hetero	INTERGENIC
SBS	Chr5	12442103	T-G	Hetero	INTERGENIC
SBS	Chr5	15253088	T-C	Hetero	INTERGENIC
SBS	Chr5	22783229	C-T	Hetero	INTERGENIC
SBS	Chr6	1229113	C-T	Hetero	INTERGENIC
SBS	Chr6	22107401	C-G	Hetero	INTERGENIC
SBS	Chr7	11028139	C-T	Homo	INTERGENIC
SBS	Chr7	11600161	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	13016791	C-G	Hetero	INTERGENIC
SBS	Chr8	6676928	A-T	Hetero	INTERGENIC
SBS	Chr8	21170590	A-C	Hetero	INTERGENIC
SBS	Chr8	26960325	C-T	Homo	INTERGENIC
SBS	Chr9	8994404	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	14618283	G-C	Hetero	INTERGENIC
SBS	Chr10	611337	C-T	Hetero	INTERGENIC
SBS	Chr10	616169	C-T	Hetero	INTERGENIC
SBS	Chr10	1063146	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	13960477	C-T	Homo	INTERGENIC
SBS	Chr10	15228942	C-A	Homo	INTERGENIC
SBS	Chr10	16588136	T-C	Homo	UTR_3_PRIME
SBS	Chr11	3888276	C-A	Hetero	INTERGENIC
SBS	Chr11	6205340	A-T	Hetero	INTERGENIC
SBS	Chr11	8616762	A-G	Hetero	INTERGENIC
SBS	Chr11	10157648	T-G	Hetero	INTERGENIC
SBS	Chr11	10157649	C-T	Hetero	INTERGENIC
SBS	Chr11	10157651	T-C	Hetero	INTERGENIC
SBS	Chr11	13568315	G-A	Hetero	INTERGENIC
SBS	Chr11	22029664	G-A	Hetero	INTERGENIC
SBS	Chr11	29404895	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1385631	1385633	2
Deletion	Chr8	3034784	3034785	1
Deletion	Chr4	3443001	3691000	247999	8
Deletion	Chr6	4383137	4383149	12
Deletion	Chr4	7372988	7372990	2
Deletion	Chr2	7808250	7808254	4
Deletion	Chr8	9390051	9390053	2
Deletion	Chr9	15420439	15420443	4
Deletion	Chr7	18618636	18618637	1
Deletion	Chr8	18711864	18711874	10	OsKitaake08g138500
Deletion	Chr3	21349686	21349687	1
Deletion	Chr7	22076260	22076263	3
Deletion	Chr5	25176309	25176310	1
Deletion	Chr5	26393880	26393886	6
Deletion	Chr11	27988513	27988535	22
Deletion	Chr8	28722008	28722015	7
Deletion	Chr3	36894991	36894992	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	34181782	34867180
Inversion	Chr1	34181786	34867235

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes