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Mutant Information

Mutant Name	FN2488 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2488 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11448693 C-A Hetero INTERGENIC
SBS Chr1 20944158 A-G Hetero INTERGENIC
SBS Chr1 20974565 T-A Hetero INTERGENIC
SBS Chr1 20974566 A-T Hetero INTERGENIC
SBS Chr1 21712247 C-T Hetero INTERGENIC
SBS Chr2 3813472 G-A Hetero INTERGENIC
SBS Chr2 10496214 C-T Hetero INTERGENIC
SBS Chr2 10728306 A-G Hetero INTERGENIC
SBS Chr2 35053306 A-G Homo INTERGENIC
SBS Chr3 10569083 A-G Hetero INTERGENIC
SBS Chr3 18586393 G-A Homo INTERGENIC
SBS Chr3 34881290 A-T Hetero INTERGENIC
SBS Chr4 13886913 G-C Homo INTERGENIC
SBS Chr4 23467093 C-T Hetero INTERGENIC
SBS Chr4 36170367 A-T Homo INTRON
SBS Chr5 13546624 T-G Homo INTERGENIC
SBS Chr5 27563310 C-T Hetero INTERGENIC
SBS Chr6 7478975 T-C Homo INTERGENIC
SBS Chr6 10687704 G-C Hetero INTRON
SBS Chr6 13487250 C-G Homo INTERGENIC
SBS Chr6 15583522 C-G Homo INTERGENIC
SBS Chr6 15585920 G-A Homo INTERGENIC
SBS Chr6 22819136 T-C Homo INTERGENIC
SBS Chr7 503373 G-T Hetero INTRON
SBS Chr7 28359980 A-T Hetero INTERGENIC
SBS Chr8 1146282 C-A Hetero INTERGENIC
SBS Chr8 6558064 C-A Homo INTERGENIC
SBS Chr8 25017120 A-T Homo INTERGENIC
SBS Chr8 28507193 G-A Hetero INTERGENIC
SBS Chr9 3120844 C-G Hetero INTERGENIC
SBS Chr9 9245001 C-T Homo SYNONYMOUS_CODING
SBS Chr9 9562427 A-T Hetero INTERGENIC
SBS Chr9 12919858 G-A Hetero INTERGENIC
SBS Chr9 15170487 T-A Hetero INTERGENIC
SBS Chr9 20967375 G-A Hetero INTERGENIC
SBS Chr10 95863 A-G Hetero INTERGENIC
SBS Chr10 7713133 C-G Hetero INTERGENIC
SBS Chr10 10772598 A-T Hetero INTERGENIC
SBS Chr10 12165649 C-T Hetero INTERGENIC
SBS Chr10 13827180 T-C Hetero INTERGENIC
SBS Chr11 11985315 T-C Hetero INTERGENIC
SBS Chr11 13648410 G-A Hetero INTERGENIC
SBS Chr11 20203915 G-T Homo INTERGENIC
SBS Chr11 20203917 C-T Homo INTERGENIC
SBS Chr12 560855 A-T Homo UTR_3_PRIME
SBS Chr12 4270938 A-G Hetero INTERGENIC
SBS Chr12 8550646 C-A Hetero INTERGENIC
SBS Chr12 8952667 T-G Hetero INTERGENIC
SBS Chr12 15476462 G-A Hetero INTERGENIC
SBS Chr12 24667474 T-G Hetero INTRON

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1388022 1388024 2
Deletion Chr9 4955555 4955558 3
Deletion Chr4 9142719 9142721 2
Deletion Chr7 11109658 11109670 12
Deletion Chr8 14490001 14577000 86999 8
Deletion Chr4 23544379 23544380 1
Deletion Chr8 25015536 25015537 1
Deletion Chr2 30729880 30729884 4
Deletion Chr1 31006561 31006574 13

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 13042713 13042716 2
Insertion Chr11 4347739 4347743 3
Insertion Chr11 7496240 7496244 3
Insertion Chr11 26444217 26444220 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 6263102 6742031
Inversion Chr9 6263127 6742037

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11448693	C-A	Hetero	INTERGENIC
SBS	Chr1	20944158	A-G	Hetero	INTERGENIC
SBS	Chr1	20974565	T-A	Hetero	INTERGENIC
SBS	Chr1	20974566	A-T	Hetero	INTERGENIC
SBS	Chr1	21712247	C-T	Hetero	INTERGENIC
SBS	Chr2	3813472	G-A	Hetero	INTERGENIC
SBS	Chr2	10496214	C-T	Hetero	INTERGENIC
SBS	Chr2	10728306	A-G	Hetero	INTERGENIC
SBS	Chr2	35053306	A-G	Homo	INTERGENIC
SBS	Chr3	10569083	A-G	Hetero	INTERGENIC
SBS	Chr3	18586393	G-A	Homo	INTERGENIC
SBS	Chr3	34881290	A-T	Hetero	INTERGENIC
SBS	Chr4	13886913	G-C	Homo	INTERGENIC
SBS	Chr4	23467093	C-T	Hetero	INTERGENIC
SBS	Chr4	36170367	A-T	Homo	INTRON
SBS	Chr5	13546624	T-G	Homo	INTERGENIC
SBS	Chr5	27563310	C-T	Hetero	INTERGENIC
SBS	Chr6	7478975	T-C	Homo	INTERGENIC
SBS	Chr6	10687704	G-C	Hetero	INTRON
SBS	Chr6	13487250	C-G	Homo	INTERGENIC
SBS	Chr6	15583522	C-G	Homo	INTERGENIC
SBS	Chr6	15585920	G-A	Homo	INTERGENIC
SBS	Chr6	22819136	T-C	Homo	INTERGENIC
SBS	Chr7	503373	G-T	Hetero	INTRON
SBS	Chr7	28359980	A-T	Hetero	INTERGENIC
SBS	Chr8	1146282	C-A	Hetero	INTERGENIC
SBS	Chr8	6558064	C-A	Homo	INTERGENIC
SBS	Chr8	25017120	A-T	Homo	INTERGENIC
SBS	Chr8	28507193	G-A	Hetero	INTERGENIC
SBS	Chr9	3120844	C-G	Hetero	INTERGENIC
SBS	Chr9	9245001	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	9562427	A-T	Hetero	INTERGENIC
SBS	Chr9	12919858	G-A	Hetero	INTERGENIC
SBS	Chr9	15170487	T-A	Hetero	INTERGENIC
SBS	Chr9	20967375	G-A	Hetero	INTERGENIC
SBS	Chr10	95863	A-G	Hetero	INTERGENIC
SBS	Chr10	7713133	C-G	Hetero	INTERGENIC
SBS	Chr10	10772598	A-T	Hetero	INTERGENIC
SBS	Chr10	12165649	C-T	Hetero	INTERGENIC
SBS	Chr10	13827180	T-C	Hetero	INTERGENIC
SBS	Chr11	11985315	T-C	Hetero	INTERGENIC
SBS	Chr11	13648410	G-A	Hetero	INTERGENIC
SBS	Chr11	20203915	G-T	Homo	INTERGENIC
SBS	Chr11	20203917	C-T	Homo	INTERGENIC
SBS	Chr12	560855	A-T	Homo	UTR_3_PRIME
SBS	Chr12	4270938	A-G	Hetero	INTERGENIC
SBS	Chr12	8550646	C-A	Hetero	INTERGENIC
SBS	Chr12	8952667	T-G	Hetero	INTERGENIC
SBS	Chr12	15476462	G-A	Hetero	INTERGENIC
SBS	Chr12	24667474	T-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1388022	1388024	2
Deletion	Chr9	4955555	4955558	3
Deletion	Chr4	9142719	9142721	2
Deletion	Chr7	11109658	11109670	12
Deletion	Chr8	14490001	14577000	86999	8
Deletion	Chr4	23544379	23544380	1
Deletion	Chr8	25015536	25015537	1
Deletion	Chr2	30729880	30729884	4
Deletion	Chr1	31006561	31006574	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6263102	6742031
Inversion	Chr9	6263127	6742037

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes